COPE pipeline

COPE specifications


Unique identifier OMICS_05256
Alternative name Connecting Overlapped Pair-End
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for Connecting Overlapped Pair-End

COPE IN pipeline

PMCID: 4433549
PMID: 25573702
DOI: 10.1093/aobpla/plu086

[…] trimming (minimum dust score of 7 for removal of low complexity reads and removal of duplicate reads, also with prinseq-lite), paired-end reads with overlapping sequences were connected using connecting overlapped pair-end (liu et al. 2012a) in the full mode. reads were filtered for chloroplast sequences by mapping the reads against the closest chloroplast genome available, which is one […]

COPE institution(s)
HKU-BGI BAL-Bioinformatics Algorithms and Core Technology Research Laboratory, The University of Hong Kong, Hong Kong

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