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Copy number alteration databases | Genome variation analysis

Cancer is known to have abundant copy number alterations (CNAs) that greatly contribute to its pathogenesis and progression. Investigation of CNA regions could potentially help identify oncogenes and tumor suppressor genes and infer cancer…
TCGA Data Portal
Dataset

TCGA Data Portal The Cancer Genome Atlas Data Portal

Generates, analyzes, and makes available genomic sequence, expression,…

Generates, analyzes, and makes available genomic sequence, expression, methylation, and copy number variation (CNV) data on over 11,000 individuals who represent over 30 different types of cancer.…

arrayMap
Dataset

arrayMap

A curated reference database and bioinformatics resource targeting copy number…

A curated reference database and bioinformatics resource targeting copy number profiling data in human cancer. The arrayMap database provides a platform for meta-analysis and systems level data…

SKY/M-FISH &…
Dataset

SKY/M-FISH & CGH Database

Provides a public platform for investigators to share and compare their…

Provides a public platform for investigators to share and compare their molecular cytogenetic data. SKY/M-FISH & CGH Database is open to everyone and all users can view an individual…

Progenetix
Dataset

Progenetix

A comprehensive, curated oncogenomic database that provides copy number…

A comprehensive, curated oncogenomic database that provides copy number aberration data to the human cancer research community. Over the past years, the database has undergone an extensive expansion…

CanGEM
Dataset

CanGEM Cancer GEnome Mine

A public, web-based database for storing quantitative microarray data and…

A public, web-based database for storing quantitative microarray data and relevant metadata about the measurements and samples. CanGEM supports the MIAME standard and in addition, stores clinical…

CaSNP
Dataset

CaSNP

A database for identifying and visualizing CNAs in cancers at any specific…

A database for identifying and visualizing CNAs in cancers at any specific region within the human genome. CaSNP stores pre-computed raw copy numbers, and dynamically generates viewable and…

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