Copy Number Explorer specifications

Information


Unique identifier OMICS_08764
Name Copy Number Explorer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Scott Newman

Information


Unique identifier OMICS_08764
Name Copy Number Explorer
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Scott Newman

Publication for Copy Number Explorer

Copy Number Explorer citation

library_books

Farewell to GBM O: Genomic and transcriptomic profiling of glioblastoma with oligodendroglioma component reveals distinct molecular subgroups

2016
PMCID: 4711079
PMID: 26757882
DOI: 10.1186/s40478-015-0270-7

[…] CA) using SNPRank segmentation and a segmented log2 ratio of 0.09 to call gains, 0.3 for amplifications, -0.135 for losses and -0.45 for homozygous deletions. Combined segmented data was viewed using Copy Number Explorer software []. […]

Copy Number Explorer institution(s)
Biostatistics & Bioinformatics Shared Resource, Winship Cancer Institute of Emory University, Atlanta, GA, USA
Copy Number Explorer funding source(s)
Research reported in this publication was supported by the Biostatistics and Bioinformatics Shared resource of Winship Cancer Institute of Emory University and NIH/NCI under award number P30CA138292.

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