CNT-ILP specifications


Unique identifier OMICS_24115
Name Copy-Number Tree Integer-Linear Program
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Requirements LEMON Graph library, ILOG CPLEX
Maintained Yes



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  • person_outline Benjamin Raphael <>
  • person_outline Ron Shamir <>

CNT-ILP article

CNT-ILP institution(s)
Department of Computer Science, Princeton University, Princeton, NJ, USA; Department of Computer Science, Center for Computational Molecular Biology, Brown University, Providence, RI, USA; School of Computer Science, Tel Aviv University, Tel Aviv, Israel; Dipartimento di Informatica Sistemistica e Comunicazione (DISCo), Univ. degli Studi di Milano-Bicocca, Milan, Italy
CNT-ILP funding source(s)
Supported by a National Science Foundation CAREER Award CCF1053753, NIH RO1HG005690 a Career Award at the Scientifc Interface from the Burroughs Wellcome Fund, and an Alfred P Sloan Research Fellowship; by the Israeli Science Foundation (Grant 317/13) and the Dotan Hemato-Oncology Research Center at Tel Aviv University; by fellowships from the Edmond J. Safra Center for Bioinformatics at Tel Aviv University and from the Israeli Center of Research Excellence (I-CORE) Gene Regulation in Complex Human Disease (Center No 41/11); by a fellowship from the I-CORE in Algorithms and the Simons Institute for the Theory of Computing in Berkeley and by the Postdoctoral Fellowship for Women of Israel’s Council for Higher Education.

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