CopyNumber450k statistics

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CopyNumber450k specifications

Information


Unique identifier OMICS_19197
Name CopyNumber450k
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.4.0
Stability Stable
Requirements
methods, BiocGenerics, Biobase, DNAcopy, preprocessCore, minfi, minfiData, CopyNumber450kData
Maintained Yes

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  • person_outline Simon Papillon-Cavanagh <>

CopyNumber450k in publication

PMCID: 4728783
PMID: 26813288
DOI: 10.1186/s13059-016-0879-2

[…] snp array data. for the 714 primary cancer samples analyzed using the humanmethylation450 beadchip, we performed a copy number analysis comparing cancer and normal samples using bioconductor and the copynumber450k r package for cnv inference using the illumina 450 k dna methylation assay. we defined a region to be aberrant if >50 % of the region presented a significant copy number alteration […]


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