0 user reviews
0 user reviews
Already have an account? Sign in to review this tool.
No review has been posted.
No open topic.
- Software type:
- Restrictions to use:
- Programming languages:
- Computer skills:
- Command line interface
- Operating system:
- Unix/Linux, Mac OS, Windows
- GNU General Public License version 2.0
- CopyNumber450kCancer version 1.0.4
- R (≥ 3.1.0)
(Marzouka et al., 2015) CopyNumber450kCancer: Baseline Correction for Accurate Copy Number Calling from the 450k Methylation Array. Bioinformatics.
- Nour-al-dain Marzouka <nour.marzouka at medsci.uu.se>
Department of Medical Sciences, Molecular Medicine and Science for Life Laboratory, Uppsala University, Sweden
The Swedish Cancer Society [CAN2010/592]; the Swedish Research Council for Science and Technology ; the Swedish Foundation for Strategic Research [RBc08-008]
Link to literature
Review of tools
Related DNA methylation array analysis tools
Deconvolutes of DNA methylation array data into source contributions from…
Deconvolutes of DNA methylation array data into source contributions from distinct cell types. methylSpectrum is a method for inferring changes in the distribution of white blood cells between…
Guides scientists the whole way through EWAS data analysis. DiMmer offers…
Guides scientists the whole way through EWAS data analysis. DiMmer offers parallelized statistical methods for identifying DMRs in both Illumina 450K and 850K EPIC chip data and also methylated…
A native python module for analysis of 450k methylation platform. PyMAP can be…
A native python module for analysis of 450k methylation platform. PyMAP can be easily deployed to cloud platforms that support python scripting language for large-scale methylation studies. By…
Analyzes methylation intensity data generated from tiling arrays to locate DMRs…
Analyzes methylation intensity data generated from tiling arrays to locate DMRs across a large set of samples simultaneously. ICDMR provides a way to calculate the concordance between adjacent…
A software analyzing Illumina Infinium HumanMethylation450 BeadChip data, which…
A software analyzing Illumina Infinium HumanMethylation450 BeadChip data, which is featured as multiple core parallel computing.