CORA specifications

Information


Unique identifier OMICS_14266
Name CORA
Alternative name COmpressive Readmapping Accelerator
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Input data A sequencing read data set and an off-the-shelf read-mapper.
Input format FASTQ
Output data A high-resolution homology table is created for the reference sequence.
Output format SAM
Operating system Unix/Linux
Programming languages C++
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.1.5
Stability Beta
Maintained Yes

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Maintainer


  • person_outline Bonnie Berger <>

Publication for COmpressive Readmapping Accelerator

CORA institution(s)
Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, IL, USA
CORA funding source(s)
This work was supported by the US National Institutes of Health GM108348, the Howard Hughes Medical Institute, IBM and the Fannie and John Hertz Foundation.

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