CoRe-ILP specifications


Unique identifier OMICS_08816
Name CoRe-ILP
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes


No version available


  • person_outline Nicolas Wieseke

Publication for CoRe-ILP

CoRe-ILP citations


DTL reconciliation repair

BMC Bioinformatics
PMCID: 5374596
PMID: 28361686
DOI: 10.1186/s12859-017-1463-9

[…] software tools have been developed to find temporally feasible maximum parsimony reconciliations in the DTL model. For example, TreeMap [] uses an exact but exponential time algorithm. ILPEACE [] and CoRe-ILP [] find optimal solutions using integer linear programming, which also has exponential worst-case running time. In contrast, the widely-used Jane [] tool uses a faster meta-heuristic that sea […]


Towards sub quadratic time and space complexity solutions for the dated tree reconciliation problem

PMCID: 4875752
PMID: 27213010
DOI: 10.1186/s13015-016-0077-5

[…] the validation of a number of coevolutionary analysis algorithms including TreeCollapse [] and RASCAL [], and includes the data sets used to validate TreeFitter [], ParaFit [], Tarzan [], CoRe-PA [], CoRe-ILP [], and Jane []. In total this data set contains 102 unique tanglegrams and is the largest single source of biological data sets for coevolutionary analysis catalogued to date. These data set […]

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