CoRe-ILP statistics

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Associated diseases

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CoRe-ILP specifications

Information


Unique identifier OMICS_08816
Name CoRe-ILP
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Nicolas Wieseke <>

Publication for CoRe-ILP

CoRe-ILP in publications

 (2)
PMCID: 5374596
PMID: 28361686
DOI: 10.1186/s12859-017-1463-9

[…] tools have been developed to find temporally feasible maximum parsimony reconciliations in the dtl model. for example, treemap [] uses an exact but exponential time algorithm. ilpeace [] and core-ilp [] find optimal solutions using integer linear programming, which also has exponential worst-case running time. in contrast, the widely-used jane [] tool uses a faster meta-heuristic […]

PMCID: 4875752
PMID: 27213010
DOI: 10.1186/s13015-016-0077-5

[…] validation of a number of coevolutionary analysis algorithms including treecollapse [] and rascal [], and includes the data sets used to validate treefitter [], parafit [], tarzan [], core-pa [], core-ilp [], and jane []. in total this data set contains 102 unique tanglegrams and is the largest single source of biological data sets for coevolutionary analysis catalogued to date. these data […]


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