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Core sample selection software tools | Genome-wide association analysis

Selecting core subsets from large collections is an effective strategy to characterize and utilize genetic resources of crop plants without the requirement of sampling the entire population.Source text:(Jeong et al., 2017) GenoCore: A simple and…
Core Hunter
Desktop

Core Hunter

Permits the selection of core collections. Core Hunter treats core selection as…

Permits the selection of core collections. Core Hunter treats core selection as a formal optimization problem by directly sampling from the entire collection, optimizing a given diversity measure. It…

GenoCore
Desktop

GenoCore

Offers a method to select a core collection using modified statistical measures…

Offers a method to select a core collection using modified statistical measures related to genetic allele coverage and diversity. GenoCore is an R package developed to select a core collection from…

MSTRAT
Desktop

MSTRAT

Allows users to interactively explore the consequences of sampling procedure…

Allows users to interactively explore the consequences of sampling procedure for different sets of traits. MSTRAT defines a robust minimum size for the core collection based on actual patterns of…

PowerCore
Desktop

PowerCore

Permits the development of core sets using the advanced M strategy. PowerCore…

Permits the development of core sets using the advanced M strategy. PowerCore indicates a high coincidence rate value for the core sets. It takes into account all classes, without omission of any of…

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