corrplot protocols

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corrplot statistics

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corrplot specifications

Information


Unique identifier OMICS_16308
Name corrplot
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.84
Stability Stable
Requirements
RColorBrewer, testthat, knitr
Source code URL https://cran.r-project.org/src/contrib/corrplot_0.84.tar.gz
Maintained Yes

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  • person_outline Taiyun Wei <>

corrplot in pipelines

 (4)
2017
PMCID: 5286867
PMID: 28148261
DOI: 10.1186/s12943-017-0594-y

[…] with high/low dclk1 expression levels were sorted by r v3.2. patients whose dclk1 expression levels was in the top 25% or bottom 25% were considered dclk1-high or dclk1-low, respectively. the corrplot function (r package corrplot) was used to confirm the correlation between the expression levels of dclk1 and other genes. a heatmap was produced using the heatmap.2 function (r package […]

2017
PMCID: 5440606
PMID: 28434944
DOI: 10.1016/j.ebiom.2017.03.045

[…] hclust provided with complete as agglomeration method. r (3.3.2) (https://www.r-project.org/) was applied for calculation of the correlations and plotting. correlations were plotted using package corrplot (0.77) (https://cran.r-project.org/package=corrplot), the heatmap was plotted using package pheatmap (1.0.8) (https://cran.r-project.org/package=pheatmap)., frequencies of adverse events […]

2017
PMCID: 5452374
PMID: 28569190
DOI: 10.1186/s12885-017-3385-3

[…] the first three components, because components 1 and 2 only explained 63% of the variance., correlation matrix plots of correlations between the different mrnas measured were constructed with the corrplot function supplied with the corrplot package in r; it used the cor function to compute correlations. the correlation matrix was computed separately for ctcs, epithelial pancreatic cancer cell […]

2013
PMCID: 3795667
PMID: 24146813
DOI: 10.1371/journal.pone.0076051

[…] to analyze the correlations between mirnas with significantly different expression (fdr < 0.01) between stimulated and sham-operated control animals. a correlation plot was generated with the corrplot package []., the fuzzy c-means algorithm implemented in the mfuzz package [] was used to perform clusterization on all 292 probes that had expressions higher than the background. […]


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corrplot in publications

 (181)
PMCID: 5943559
PMID: 29774022
DOI: 10.3389/fimmu.2018.00821

[…] cytokine plasma levels in the same subjects in the acute and recovery phases (p-value < 0.05). we used graphpad prism 6.0 software (graphpad software, san diego, ca, usa), r packages “heatmap2,” “corrplot,” and “ggplot” and cytoscape to display the results., to characterize early immune activation during acute zikv infection, we compared the plasma levels of cytokines, chemokines, and growth […]

PMCID: 5932158
PMID: 29755398
DOI: 10.3389/fneur.2018.00266

[…] ages spanning prenatal stages like 12 pcw, 37 pcw to postnatal stages, such as 1, 15–19, and 40 years of age. pearson correlation matrices or correlograms were constructed and visualized using the corrplot package of r bioconductor suite. all graphs have been made using rstudio 1.0.153 ()., human embryonic stem cells (h9-hesc, nih approved) were obtained from human embryonic stem cell core, […]

PMCID: 5921323
PMID: 29699572
DOI: 10.1186/s12974-018-1161-1

[…] the index of evaluation was the false discrimination rates, which were used to compare the method of dimension reduction. the internal associations among glycans were analyzed using the r package “corrplot.” a receiver operating characteristic (roc) curve was developed for the calculation of the area under the curve (auc) with a 95% confidence interval (ci)., to investigate the relationship […]

PMCID: 5917008
PMID: 29725290
DOI: 10.3389/fncel.2018.00106

[…] analyses and data visualizations were performed in rstudio (rstudio team, ) using r version 3.2.2 (r core team, ) and the packages rocr (sing et al., ), plyr (wickham, ), beeswarm (eklund, ), and corrplot (wei, ). a wilcoxon rank sum test with continuity correction was applied for group comparisons unless otherwise specified in the respective results section., to identify the best features […]

PMCID: 5930333
PMID: 29475862
DOI: 10.1128/AEM.02601-17

[…] cutoffs (0.8 and 1) based on the pearson residuals of an independence model for double square root-transformed rarefied community (sample size, 1,532). r packages ram (), reshape2 (), lattice (), corrplot (), and ggplot2 () were used for manipulating otu tables and visualization., all its metabarcoding sequences are available through the ncbi sequence read archive (sra) under study accession […]


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