Corset pipeline

Corset specifications

Information


Unique identifier OMICS_12944
Name Corset
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages C++
Computer skills Advanced
Version 1.07
Stability Stable
Requirements SAMtools
Maintained Yes

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Documentation


Maintainer


  • person_outline Alicia Oshlack <>

Additional information


https://github.com/Oshlack/Corset/wiki

Publication for Corset

Corset citations

 (2)
2017
PMCID: 5827264

[…] can be used to create consensus gene sequences. however, since both programs perform their clustering based on all transcript sequences, paralogous genes may be erroneously merged. in contrast, corset (davidson and oshlack, 2014) identifies sequence similarity between transcripts by identifying multi-mapped reads resulting from re-mapping of reads against the reconstructed transcriptome. […]

2017
PMCID: 5695279

[…] 219,831 transcripts with average length of 771 bp and n50 of 1302 bp (table 2). the length distribution of transcripts is showing in s1 fig. the de novo assembled transcriptomes were clustered by ‘corset’, which is a method and software for obtaining gene-level counts from any de novo transcriptome assembly [32]. after clustering by corset, a total of 139,863 clusters were obtained, […]

Corset institution(s)
Murdoch Childrens Research Institute, Royal Children’s Hospital, Melbourne, VIC, Australia; Department of Genetics, University of Melbourne, Melbourne, VIC, Australia
Corset funding source(s)
Supported by an NHMRC Career Development Fellowship APP1051481.

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