Cortex specifications

Unique identifier:
OMICS_00056
Software type:
Application/Script
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS
License:
GNU General Public License version 2.0, MIT License
Version:
0.2
Maintained:
Yes
Alternative names:
McCortex, cortex_var
Interface:
Command line interface
Input format:
FASTA, FASTQ, SAM, BAM & CRAM
Programming languages:
C
Computer skills:
Advanced
Stability:
Beta

versioning

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Cortex support

Documentation

Maintainer

  • Isaac Turner <>

Additional information

http://mcveanlab.github.io/mccortex/ Previous version: http://cortexassembler.sourceforge.net/index_cortex_var.html

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Credits

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Publications

Institution(s)

Wellcome Trust Centre for Human Genetics, Oxford, UK; Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, Oxford, UK; European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, UK

Funding source(s)

Supported by the Wellcome Trust (grant numbers 090532/Z/09/Z and 100956/Z/13/Z), Wellcome Trust Research Studentship award (097310/Z/11/Z), a PhD studentship from the BBSRC and a Wellcome Trust/Royal Society Sir Henry Dale Fellowship (grant 102541/Z/13/Z).

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