COSMOS specifications

Information


Unique identifier OMICS_10226
Name COSMOS
Software type Framework/Library
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 3.0, MIT License
Computer skills Advanced
Version 2.0
Stability Beta
Source code URL https://codeload.github.com/LPM-HMS/COSMOS2/zip/master
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Peter J. Tonellato

Additional information


http://cosmos.hms.harvard.edu/COSMOS2/

Publication for COSMOS

COSMOS citations

 (2)
library_books

Scalable and cost effective NGS genotyping in the cloud

2015
BMC Med Genomics
PMCID: 4608296
PMID: 26470712
DOI: 10.1186/s12920-015-0134-9

[…] GenomeKey implemented in COSMOS was deployed on AWS cloud cluster (Table ) to process successively larger sets of whole exome (1,3,10, 25, 50) and whole genome (1, 3, 10, 25) datasets. Exomes and Genomes were split and parall […]

library_books

Jflow: a workflow management system for web applications

2015
Bioinformatics
PMCID: 5859998
PMID: 26454273
DOI: 10.1093/bioinformatics/btv589

[…] nd execution. Unfortunately, such environments come with their own interface, complicating their integration within already existing web tools. Other WMS such as weaver (), Snakemake (), Ruffus () or Cosmos () provide a framework or a domain-specific language to developers wanting to build and run workflows. These software packages offer the flexibility and power of a high-level programming langua […]

COSMOS institution(s)
Center for Biomedical Informatics, Harvard Medical School, Boston, MA, USA; Department of Pathology, Beth Israel Deaconess Medical Center, Boston, MA, USA; Department of Biology, Mohammed V University-Agal, Rabat, Morocco
COSMOS funding source(s)
Supported by the National Institutes of Health [1R01MH090611-01A1, 1R01LM011566, and 5T15LM007092] and a Fulbright Fellowship.

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