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Protocols

CosmosID specifications

Information


Unique identifier OMICS_16921
Name CosmosID
Restrictions to use None
Community driven No
Data access Browse, Application programming interface
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline Cosmosid Team

CosmosID citations

 (3)
library_books

Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

2017
Genome Biol
PMCID: 5609029
PMID: 28934964
DOI: 10.1186/s13059-017-1299-7

[…] Some authors (listed above) are members of commercial operations in metagenomics, including IBM, CosmosID, Biotia, and One Codex. […]

library_books

Metagenomic analysis of an ecological wastewater treatment plant’s microbial communities and their potential to metabolize pharmaceuticals

2016
F1000Res
PMCID: 4995686
PMID: 27610223
DOI: 10.12688/f1000research.9157.1

[…] establish a minimum support threshold (or false-positive cut-off) for taxonomic profiling. One control dataset is comprised of single-end Illumina reads from a synthetic microbial sample prepared by CosmosID. This constructed freshwater sample simulates organisms found in the Delaware River and is described here: http://www.cosmosid.net/constructed-freshwater. The second control dataset is single […]

call_split

Microbial Community Profiling of Human Saliva Using Shotgun Metagenomic Sequencing

2014
PLoS One
PMCID: 4028220
PMID: 24846174
DOI: 10.1371/journal.pone.0097699
call_split See protocol

[…] dren’s Hospital (NCH) Biomedical Genomics Core (Columbus, Ohio) using the TruSeq SBS Kit v3 reagents (Illumina) for paired end sequencing with read lengths of 100 base pairs (bps) (200 cycles) and at CosmosID with an Illumina GAIIx for 150 base pairs (bps) single read using the TruSeq SBS Kit v5 reagents (Illumina). Primary analysis (image analysis and basecalling) were performed using HiSeq Contr […]

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