COV2HTML pipeline

COV2HTML specifications

Information


Unique identifier OMICS_01302
Name COV2HTML
Interface Web user interface
Restrictions to use None
Programming languages PHP, Python
License GNU General Public License version 3.0
Computer skills Basic
Stability Stable
Maintained Yes

Subtool


  • MAP2COV

Maintainer


  • person_outline Marc Monot <>

Publication for COV2HTML

COV2HTML IN pipelines

 (4)
2017
PMCID: 5563952
PMID: 28498372
DOI: 10.1038/ismej.2017.63

[…] or phage to phage, before testing for differential expression., rna-seq data have been deposited in ncbi-geo with accession no. gse86022., rna-seq coverage visualization is available through the cov2html software at https://mmonot.eu/cov2html/visualisation.php?str_id=-36 for a comparison of the host (0 min/13 min) and https://mmonot.eu/cov2html/visualisation.php?str_id=-38 for a comparison […]

2017
PMCID: 5563952
PMID: 28498372
DOI: 10.1038/ismej.2017.63

[…] differential expression., rna-seq data have been deposited in ncbi-geo with accession no. gse86022., rna-seq coverage visualization is available through the cov2html software at https://mmonot.eu/cov2html/visualisation.php?str_id=-36 for a comparison of the host (0 min/13 min) and https://mmonot.eu/cov2html/visualisation.php?str_id=-38 for a comparison of the phage (3.5 min/13 min)., […]

2017
PMCID: 5563952
PMID: 28498372
DOI: 10.1038/ismej.2017.63

[…] rna-seq coverage visualization is available through the cov2html software at https://mmonot.eu/cov2html/visualisation.php?str_id=-36 for a comparison of the host (0 min/13 min) and https://mmonot.eu/cov2html/visualisation.php?str_id=-38 for a comparison of the phage (3.5 min/13 min)., to compare the molecular mechanisms of infection used by virulent phages that recently diverged, we chose two […]

2013
PMCID: 3649979
PMID: 23675309
DOI: 10.1371/journal.pgen.1003493

[…] into bam files with the samtools script [85] (table s2). the data were visualized at a strand-specific manner (for 5′-end rna-seq libraries) or as a whole transcript coverage map (for rna-seq) using cov2html (marc monot, submitted). all tsss detected by 5′-end rna-seq were inspected manually to identify potential srnas. to estimate the relevance of each tss, a score was computed […]

COV2HTML institution(s)
Laboratoire Pathogenese des Bacteries Anaerobies, Institut Pasteur, Paris, France; Unit for Integrated Mycobacterial Pathogenomics, Institut Pasteur, Paris, France
COV2HTML funding source(s)
Supported by Institut Pasteur and Grant ERA-PTG/SAU/0002/2008 (ERA-NET PathoGenoMics).

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