CAn specifications
- Unique identifier:
- OMICS_13628
- Software type:
- Pipeline/Workflow
- Restrictions to use:
- None
- Input format:
- SAM
- Operating system:
- Unix/Linux, Mac OS, Windows
- Computer skills:
- Medium
- Requirements:
- Matplotlib, Numpy, Scipy
- Name:
- CoverageAnalyzer
- Interface:
- Graphical user interface
- Input data:
- A dataset containing RNA sequencing (RNA Seq) reads mapped to a genome or transcriptome
- Output data:
- Visualization tab (independent plots and differential comparison for mismatch and/or arrest parameters), candidate casting tab
- Programming languages:
- Java
- Stability:
- Stable
- Maintained:
- Yes
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CAn distribution
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CAn support
Maintainer
- Ralf Hauenschild <>
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Publications
-
(Hauenschild et al., 2016)
CoverageAnalyzer (CAn): A Tool for Inspection of Modification Signatures in RNA Sequencing Profiles.
Biomolecules.
PMID: 27834909 DOI: 10.3390/biom6040042
Institution(s)
Institute of Pharmacy and Biochemistry, Johannes Gutenberg University Mainz, Mainz, Germany; Institute for Computer Sciences, Johannes Gutenberg University Mainz, Mainz, Germany; IMoPA UMR7365 CNRS-UL, BioPole de l’Université de Lorraine, Vandoeuvre-les-Nancy, France
Funding source(s)
This work was supported by the DFG SPP1784, MH3397/12-1, MH3397/14-1, by an ANR HTRNAMod ANR-13-ISV8-0001 grant and by a fellowship from the International PhD Programme (IPP) at the Institute of Molecular Biology (IMB) Mainz, funded by the Boehringer Ingelheim Foundation.
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