CAn specifications

Unique identifier:
OMICS_13628
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
SAM
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Medium
Requirements:
Matplotlib, Numpy, Scipy
Name:
CoverageAnalyzer
Interface:
Graphical user interface
Input data:
A dataset containing RNA sequencing (RNA Seq) reads mapped to a genome or transcriptome
Output data:
Visualization tab (independent plots and differential comparison for mismatch and/or arrest parameters), candidate casting tab
Programming languages:
Java
Stability:
Stable
Maintained:
Yes

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

CAn distribution

download

CAn support

Maintainer

  • Ralf Hauenschild <>

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Institute of Pharmacy and Biochemistry, Johannes Gutenberg University Mainz, Mainz, Germany; Institute for Computer Sciences, Johannes Gutenberg University Mainz, Mainz, Germany; IMoPA UMR7365 CNRS-UL, BioPole de l’Université de Lorraine, Vandoeuvre-les-Nancy, France

Funding source(s)

This work was supported by the DFG SPP1784, MH3397/12-1, MH3397/14-1, by an ANR HTRNAMod ANR-13-ISV8-0001 grant and by a fellowship from the International PhD Programme (IPP) at the Institute of Molecular Biology (IMB) Mainz, funded by the Boehringer Ingelheim Foundation.

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

Related Tools