Protocols

CPASS specifications

Information


Unique identifier OMICS_22004
Name CPASS
Alternative name Comparison of Protein Active Site Structures
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Computer skills Advanced
Version 2.0
Stability Stable
Registration required Yes
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Robert Powers

Publication for Comparison of Protein Active Site Structures

CPASS citation

call_split

Structural and Functional Similarity between the Bacterial Type III Secretion System Needle Protein PrgI and the Eukaryotic Apoptosis Bcl 2 Proteins

2009
PLoS One
PMCID: 2757720
PMID: 19823588
DOI: 10.1371/journal.pone.0007442
call_split See protocol

[…] d ligand-docked structures with experimental x-ray and NMR structures has yielded an overall average rmsd of 1.17±0.74 Å .A co-structure of the lipid derivative DDAB bound to PrgI was uploaded to the CPASS database (http://bionmr-c1.unl.edu/CPASS/cpass.htm) to identify proteins with similar ligand binding sites by maximizing an rmsd weighted BLOSUM62 , scoring function (Sab). (3)where active site […]

CPASS institution(s)
Department of Chemistry, University of Nebraska-Lincoln, Lincoln, NE, USA; Holland Computing Center, University of Nebraska-Lincoln, Lincoln, NE, USA
CPASS funding source(s)
Supported by the National Institute of Allergy and Infectious Diseases [grant number R21AI081154] and by the Nebraska Tobacco Settlement Biomedical Research Development Funds.

CPASS reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review CPASS