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cPath specifications

Information


Unique identifier OMICS_25135
Name cPath
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements
MySQL, Apache Tomcat Server, Apache Ant, Perl
Maintained Yes

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Maintainer


  • person_outline Ethan Cerami <>

Publication for cPath

cPath in publications

 (20)
PMCID: 5937800
DOI: 10.1167/iovs.17-23616

[…] mass determination), blood samples were collected from the jugular vein, and pigs were subsequently euthanized for tissue collection. plasma was analyzed for lipids, insulin, and glucose profiling (cpath llc, columbia, mo, usa)., following euthanasia, eyelids were removed using blunt scissors for easier access to the eye globe. curved iris scissors were used to sever the ocular muscles, […]

PMCID: 4853852
PMID: 27137215
DOI: 10.1186/s13073-016-0282-3

[…] molecular interactions (mimi) plugin for cytoscape []. the network was created based on molecular interactions from multiple biological interaction databases like bind, biogrid, ccsb at harvard, cpath, dip, go, hprd, intact, interpro, kegg and pubmed []. the gene–mirna interactions were obtained using rmir analysis as previously described and incorporated in the comprehensive network […]

PMCID: 4841970
PMID: 27107567
DOI: 10.1186/s12865-016-0145-0

[…] . .fig. 2, pathway assignments and functional annotations were analyzed using david bioinformatics database [], as well as ingenuity knowledge base [] and an interaction repository, which is based on cpath [–] and includes interactions that have been curated by genego (http://portal.genego.com) and ingenuity. networks retrieved from the latter were visualized using cytoscape []. both resources wer […]

PMCID: 4770699
PMID: 26922946
DOI: 10.1186/s12862-016-0617-0

[…] all authors have read and approved the final version of the manuscript., we thank pauline kamath and neil tsutsui for comments that have helped improve this paper. this work was supported by nsf/cpath-2 cns0939153 […]

PMCID: 4731065
PMID: 26821366
DOI: 10.1371/journal.pone.0148121

[…] squirrels was not affected by roads and traffic, but path tortuosity increased as distance to roads increased ()., adistance to roads was square root transformed, bspeed was natural-log transformed, cpath tortuosity (net displacement/step length) was natural-log transformed, adistance to roads was square root transformed, bspeed was natural-log transformed, cpath tortuosity (net […]


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cPath institution(s)
Computational Biology Center, Memorial Sloan-Kettering Cancer Center, New York, NY, USA; Banting and Best Department of Medical Research, Terrence Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, ON, Canada
cPath funding source(s)
Supported by the National Cancer Institute (NCI) caBIG initiative and the Alfred W. Bressler Scholars Endowment Fund.

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