CPFP protocols

CPFP specifications

Information


Unique identifier OMICS_02448
Name CPFP
Alternative name Central Proteomics Facilities Pipeline
Software type Package/Module, Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages Perl
Computer skills Advanced
Stability Stable
High performance computing Yes
Maintained Yes

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Maintainer


  • person_outline David C. Trudgian <>

Publication for Central Proteomics Facilities Pipeline

CPFP IN pipelines

 (2)
2015
PMCID: 4549250
PMID: 26305100
DOI: 10.1371/journal.ppat.1005128

[…] spectra for each full spectrum acquired raw ms data files were converted to peak list format using proteowizard msconvert (version 3.0.3535) [45]. the resulting files were analyzed using the central proteomics facilities pipeline (cpfp), version 2.1.0 [46,47]. peptide identification was performed using the x!tandem [48] and open ms search algorithm (omssa) [49] search engines […]

2015
PMCID: 4549250
PMID: 26305100
DOI: 10.1371/journal.ppat.1005128

[…] raw ms data files were converted to peak list format using proteowizard msconvert (version 3.0.3535) [45]. the resulting files were analyzed using the central proteomics facilities pipeline (cpfp), version 2.1.0 [46,47]. peptide identification was performed using the x!tandem [48] and open ms search algorithm (omssa) [49] search engines against a database consisting of v. alginolyticus […]

CPFP institution(s)
Sir William Dunn School of Pathology, University of Oxford, South Parks Road, Oxford, UK; Henry Wellcome Building for Molecular Physiology, University of Oxford, Roosevelt Drive, Oxford, UK; Computational Biology Research Group, University of Oxford, John Radcliffe Hospital, Oxford, UK
CPFP funding source(s)
Supported by E.P. Abraham Cephalosporin Trust and John Fell OUP Research Fund.

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