CPFP pipeline

CPFP specifications


Unique identifier OMICS_02448
Alternative name Central Proteomics Facilities Pipeline
Software type Package/Module, Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages Perl
Computer skills Advanced
Stability Stable
High performance computing Yes
Maintained Yes



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  • person_outline David C. Trudgian <>

Publication for Central Proteomics Facilities Pipeline

CPFP citation

PMCID: 3494207

[…] using proteowizard msconvert release 3.0.3535 (q exactive data). both tools were used with default parameters except that zlib compression of spectral data was enabled. data was uploaded to the central proteomics facilities pipeline (cpfp at: https://cpfp-master.molbiol.ox.ac.uk/cpfp_demo/auth/login) (29). files were searched using mascot version 2.3.01 (matrix science), x!tandem version […]

CPFP institution(s)
Sir William Dunn School of Pathology, University of Oxford, South Parks Road, Oxford, UK; Henry Wellcome Building for Molecular Physiology, University of Oxford, Roosevelt Drive, Oxford, UK; Computational Biology Research Group, University of Oxford, John Radcliffe Hospital, Oxford, UK
CPFP funding source(s)
Supported by E.P. Abraham Cephalosporin Trust and John Fell OUP Research Fund.

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