CpG_MI statistics

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Citations per year

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Tool usage distribution map

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Associated diseases

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CpG_MI specifications

Information


Unique identifier OMICS_22859
Name CpG_MI
Interface Web user interface
Restrictions to use None
Programming languages Perl
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainers


  • person_outline Yan Zhang <>
  • person_outline Xia Li <>

Publication for CpG_MI

CpG_MI in publications

 (3)
PMCID: 4302108
PMID: 25547756
DOI: 10.1186/s12859-014-0412-0

[…] igureĀ  (additional file : table s37 for full list). statistical significance of the differences between groups was calculated using the mann whitney u test., cpg islands in mouse were downloaded from cpg_mi []. methylation density plots for the three groups using h3k4me1 data in mel cells were generated using seqminer []. experimentally validated tissue specific enhancers (vista enhancers) in mous […]

PMCID: 3973331
PMID: 24413563
DOI: 10.1093/nar/gkt1358

[…] for cpg islands, conserved tf binding sites (tfbsconssite) and actual tf binding as determined by chip-seq (tfbsclusteredv2) were downloaded from the encode consortium. cpg islands classified by the cpg_mi algorithm () were obtained from http://bioinfo.hrbmu.edu.cn/cpgmi/. all datasets used correspond to the human genome built hg19. line plots were generated with annotatepeaks. dot plots […]

PMCID: 3905897
PMID: 24038472
DOI: 10.1093/nar/gkt818

[…] chromatin modifications: ccctc-binding factor (ctcf), polymerase ii (polii), h3k4me1, h3k4me3, h3k9me3, h3k27ac, h3k27me3 and h3k36me3 (), in addition to input. cpg islands information predicted by cpg_mi was obtained from su et al. (). other genomic features including phastcons most conserved regions and repeat elements were downloaded from ucsc (mouse mm9 build) (). orf-related features […]


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CpG_MI institution(s)
College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China
CpG_MI funding source(s)
Supported by National High Tech Development Project of China, the 863 Program (grant number 2007AA02Z329), National Natural Science Foundation of China (grant numbers 30871394 and 30370798), the National Basic Research Program of China, the 973 Program (grant number 2008CB517302), the Natural Science Foundation of Heilongjiang Province (grant number D2007-35) and the Heilongjiang Province Department of Education Outstanding Overseas Scientist (grant number 1152hq28).

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