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chevron_left Methylation scoring Quantitative score assessment Differentially methylated region detection Methylation annotation chevron_right

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CpG_MPs specifications


Unique identifier OMICS_00596
Name CpG_MPs
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Input format Bismark output, text
Output format Tab-delimited text, xls, images, genome browser
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained No


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Publication for CpG_MPs

CpG_MPs citations


DNA methylation in silkworm genome may provide insights into epigenetic regulation of response to Bombyx mori cypovirus infection

Sci Rep
PMCID: 5700172
PMID: 29167521
DOI: 10.1038/s41598-017-16357-7

[…] were independent from each other. go and kegg pathway analysis of genes containing dmrs were performed as described in the “transcriptome analysis” section., methylated regions were identified by cpg_mps (v1.1.0) with the required sequencing depth great than 10 and average c methylation ratio greater than 0.55, and then converted to wig format by using perl script for visualization on igv […]


Identifying CpG sites with different differential methylation frequencies in colorectal cancer tissues based on individualized differential methylation analysis

PMCID: 5564570
PMID: 28537885
DOI: 10.18632/oncotarget.17647

[…] crc samples could be subtype-specific, which provide hints for dissecting the inter-individual heterogeneity of crc. notably, researchers have recently proposed new methods such as cellmethy [] and cpg_mps [] to identify another type of disease methylation biomarkers namely differential concordant methylation of adjacent cpgs, which may provide insight into methylation mechanisms. in line […]


Targeted Programming of the Lymph Node Environment Causes Evolution of Local and Systemic Immunity

PMCID: 4978773
PMID: 27547269
DOI: 10.1007/s12195-016-0455-6

[…] immunized mice). for mice immunized with ova vaccine depots both treatments induced very potent antigen-specific responses, but no significant differences were measured between responses induced by cpg mps and polyic mps at either day (fig. , left). however, in mice treated with trp2 vaccine depots, a significantly higher level of trp2 specific cd8+ t cells was observed in mice immunized […]


Chromatin modifications and genomic contexts linked to dynamic DNA methylation patterns across human cell types

Sci Rep
PMCID: 4325317
PMID: 25673498
DOI: 10.1038/srep08410

[…] (), which may improve the understanding of their interactions., a large number of reliable unmethylated regions and methylated regions at the genome scale were identified in h1, npc, and imr90 using cpg_mps ( and ). to investigate the distributions of dna methylation patterns in different genomic regions, the whole genome-wide dna methylation patterns were grouped into four categories according […]

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CpG_MPs institution(s)
College of Bioinformatics Science and Technology, Harbin Medical University, Harbin; School of Life Science and Biotechnology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, China

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