CpGProD pipeline

CpGProD specifications

Information


Unique identifier OMICS_08288
Name CpGProD
Alternative name CpG island Promoter Detection
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Sequences
Input format FASTA
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Versioning


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Maintainer


  • person_outline Loic Ponger <>

Information


Unique identifier OMICS_08288
Name CpGProD
Alternative name CpG island Promoter Detection
Interface Web user interface
Restrictions to use None
Input data Sequences
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Maintainer


  • person_outline Loic Ponger <>

Publication for CpG island Promoter Detection

CpGProD IN pipelines

 (2)
2008
PMCID: 2459278
PMID: 18474600
DOI: 10.1074/jbc.M801223200

[…] repeat masker version open-3.1.5. confirmation of pol ii promoter was conducted with promoter scan ii and novel neural network promoter prediction. identification of cpg islands was performed using cpgprod (cpg island promoter detection) software. in silico analysis for transcription factor-binding sites was performed with matinspector suite, release 7.4 (36). the results are expressed […]

2008
PMCID: 2459278
PMID: 18474600
DOI: 10.1074/jbc.M801223200

[…] version open-3.1.5. confirmation of pol ii promoter was conducted with promoter scan ii and novel neural network promoter prediction. identification of cpg islands was performed using cpgprod (cpg island promoter detection) software. in silico analysis for transcription factor-binding sites was performed with matinspector suite, release 7.4 (36). the results are expressed as the means ± […]

CpGProD institution(s)
Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 5558 - Université Claude Bernard, Villeurbanne, France

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