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CPGR specifications

Information


Unique identifier OMICS_20992
Name CPGR
Alternative name Comprehensive Phytopathogen Genomics Resource
Restrictions to use None
Database management system MySQL
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline Robin Buell

Publication for Comprehensive Phytopathogen Genomics Resource

CPGR citations

 (7)
library_books

Immunogenicity of plant‐produced African horse sickness virus‐like particles: implications for a novel vaccine

2017
Plant Biotechnol J
PMCID: 5787833
PMID: 28650085
DOI: 10.1111/pbi.12783

[…] The identities of the protein species observed on the Coomassie‐stained gel were independently determined by the Centre for Proteomic and Genomic Research (CPGR, Cape Town, South Africa). Gel pieces were washed and fragmented by in‐gel trypsin digestion as per the protocol described by Shevchenko et al. (). The peptide solution was analysed using a Dione […]

library_books

The Development of Computational Biology in South Africa: Successes Achieved and Lessons Learnt

2016
PLoS Comput Biol
PMCID: 4742231
PMID: 26845152
DOI: 10.1371/journal.pcbi.1004395

[…] and industry. Examples include internships offered by the TIA, NRF, and H3ABioNet, train-the-trainer programs, and a Knowledge Transfer Program (KTP) by the Centre for Proteomic and Genomic Research (CPGR). […]

library_books

“Broadband” Bioinformatics Skills Transfer with the Knowledge Transfer Programme (KTP): Educational Model for Upliftment and Sustainable Development

2015
PLoS Comput Biol
PMCID: 4652891
PMID: 26583922
DOI: 10.1371/journal.pcbi.1004512

[…] nput from a few isolated senior scientists from Africa, many of whom are based abroad [, , –].This article describes the KTP, an initiative supported by the Centre for Proteomic and Genomic Research (CPGR) and the NIH-funded H3ABioNet project to strengthen bioinformatics capability-building at local institutions in Africa where life scientists are in need of skilled bioinformaticians. The KTP is a […]

library_books

Comparative genomics and phylogenetic discordance of cultivated tomato and close wild relatives

2015
PeerJ
PMCID: 4358695
PMID: 25780758
DOI: 10.7717/peerj.793

[…] kage. Unmapped contigs were processed by Seqclean (https://sourceforge.net/projects/seqclean/) to identify matches to S. lycopersicum plastid or mitochondrial DNA (), plant pathogen sequence found in Comprehensive Phytopathogen Genomics Resource (CPGR) (), vector sequence found in UniVec database (http://www.ncbi.nlm.nih.gov/VecScreen/UniVec.html), or contigs that were low complexity. Putative del […]

library_books

Bioinformatics Education—Perspectives and Challenges out of Africa

2014
Brief Bioinform
PMCID: 4364068
PMID: 24990350
DOI: 10.1093/bib/bbu022

[…] ransfer. Some universities have special funding for this purpose, and one example of such a program specifically for bioinformatics is offered by Centre for Proteomic and Genomic Research (http://ktp.cpgr.org.za/).E-learning: A number of online platforms have emerged all over the world [] impacting on education across many fields []; see [] for a discussion of the terminologies used in this contex […]

call_split

Transcriptional dynamics of the developing sweet cherry (Prunus avium L.) fruit: sequencing, annotation and expression profiling of exocarp associated genes

2014
PMCID: 4591669
PMID: 26504533
DOI: 10.1038/hortres.2014.11
call_split See protocol

[…] ), mitochondrial (NCBI RefSeq release 51, directory: mitochondrion), ribosomal RNA (http://bioinformatics.psb.ugent.be/webtools/rRNA/rRNA.tar), plant pathogen (ftp://ftp.plantbiology.msu.edu/pub/data/CPGR/all.plant_pathogen.wgs_and_complete_genome.fasta.gz), yeast (http://downloads.yeastgenome.org/sequence/S288C_reference/genome_releases/S288C_reference_genome_R64-1-1_20110203.tgz) and viral (NCBI […]

Citations

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CPGR institution(s)
Department of Plant Biology, Michigan State University, East Lansing, MI, USA; Department of Genetics, Genetics-Biotech Center BLDG, University of Wisconsin, Madison, WI, USA; Department of Bioagricultural Sciences and Pest Management, Plant Science, Colorado State University, Fort Collins, CO, USA; Agriculture and Agri-Food Canada, ON, Canada; Department of Biology, Carleton University, Ottawa, ON Canada
CPGR funding source(s)
Supported by USDA National Institute for Food and Agriculture (grant nos. 2006-55605-16645 and 2006-55605-04558.); the joint CPGR–ASAP work is funded by the USDA National Institute for Food and Agriculture (grant no. 2009-65109-05719).

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