CRAC statistics

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Citations per year

Number of citations per year for the bioinformatics software tool CRAC
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Tool usage distribution map

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Associated diseases

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CRAC specifications

Information


Unique identifier OMICS_01240
Name CRAC
Alternative name Complex Reads Analysis & Classification
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina, Life Technologies, Roche
Operating system Unix/Linux, Mac OS
Programming languages C++
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes

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Maintainer


  • person_outline CRAC

Additional information


A free trial is available on the site.

Information


Unique identifier OMICS_01240
Name CRAC
Alternative name Complex Reads Analysis & Classification
Interface Web user interface
Restrictions to use None
Biological technology Illumina, Life Technologies, Roche
Programming languages C++
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline CRAC

Additional information


A free trial is available on the site.

Publication for Complex Reads Analysis & Classification

CRAC citations

 (4)
library_books

New chimeric RNAs in acute myeloid leukemia

2017
F1000Res
PMCID: 5861515
PMID: 29623188
DOI: 10.5256/f1000research.12254.r25101

[…] al karyotype (NK), while the other two presented with an abnormal karyotype (AK), one with an Inv16 and the other with a t(15,17) translocation (sample names 1–3, ). The sequences were analyzed using Crac and CracTools. The selected chRNA candidates were tested by qPCR, and sequenced when qPCR displayed a positive signal. Some candidates could not be validated by qPCR due to the difficulty in desi […]

library_books

On the evaluation of the fidelity of supervised classifiers in the prediction of chimeric RNAs

2016
BioData Min
PMCID: 5090896
PMID: 27822312
DOI: 10.1186/s13040-016-0112-6

[…] hmark pipeline (Fig. ) using the above genome simulation procedure along with i) the generation of corresponding RNA-seq reads by Flux Simulator [] and ii) labelling chRNAs classes through the use of CRAC Software []. Fig. 1 CRAC has been chosen to perform this experimental study for two main reasons. First of all, it is a splice-aware mapping software that integrates the identification of chimeri […]

library_books

An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies

2014
BMC Genomics
PMCID: 4378021
PMID: 25494611
DOI: 10.1186/1471-2164-15-1103

[…] Gap closing was performed in 4 steps using the OT-2009 dataset (1) de novo assembly, (2) IMAGE and (3) PCR sequencing (4) CRAC. De novo scaffolds recruitment to close gaps in the reference genome sequence was done as follows. De novo scaffolds were aligned onto the reference genome sequence using blastn. If the scaffold […]

library_books

Data compression for sequencing data

2013
PMCID: 3868316
PMID: 24252160
DOI: 10.1186/1748-7188-8-25

[…] ent in the reference genome), so spliced mappings must be looked for, which is unusual for standard DNA reads mapping. Some mappers for this problem also make use of the FM-index, e.g., TopHat [] and CRAC []. A comprehensive list of RNA-Seq mapping approaches can be found in [].The FM-index searches for a pattern finding its successive letters, from right to left, which can be called backward exte […]


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CRAC institution(s)
Laboratoire d'Informatique, de Robotique et de Microélectronique de Montpellier (LIRMM), UMR 5506, CNRS and Université de Montpellier 2, Montpellier, France

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