CRAVAT specifications

Information


Unique identifier OMICS_00147
Name CRAVAT
Alternative names Cancer-Related Analysis of Variants Toolkit, CRAVAT 4, CRAVAT 5
Interface Web user interface, Application programming interface
Restrictions to use None
Input data Variant calls from sequencing studies in either genomic coordinates (hg18 or hg19) or transcript coordinates—NCBI Refseq, CCDS and Ensembl.
Input format VCF, CRAVAT format
Computer skills Basic
Version 4.3
Stability Stable
Maintained Yes

Subtools


  • CHASM (Cancer-specific High-throughput Annota
  • SNVGet
  • VEST

Download


Maintainer


  • person_outline Rachel Karchin <>

Additional information


http://www.cravat.us/CRAVAT/help.jsp?chapter=help_report&article=top

Publications for Cancer-Related Analysis of Variants Toolkit

CRAVAT institution(s)
Department of Biomedical Engineering, Department of Computer Science, The Institute for Computational Medicine, The Johns Hopkins University, Baltimore, MD, USA; In Silico Solutions, Falls Church, VA, USA; Department of Oncology, The Johns Hopkins University School of Medicine, Baltimore, MD, USA
CRAVAT funding source(s)
National Institutes of Health CA 152432; National Science Foundation DBI 0845275

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