CressExpress statistics

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CressExpress specifications


Unique identifier OMICS_06060
Name CressExpress
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained Yes


  • Plants and Fungi
    • Arabidopsis thaliana

Publication for CressExpress

CressExpress in pipeline

PMCID: 3339426
PMID: 22078230
DOI: 10.1186/1756-0500-4-493

[…] map of s. tuberosum orthologous clusters to arabidopsis probesets). a program was written in perl to download the expression data from over 1700 arabidopsis affymetrix microarrays available at cressexpress []. vectors of each probeset in the affymetrix microarrays were created, including expression information from each microarray in the collection. each of the differentially expressed s. […]

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CressExpress in publications

PMCID: 5469152
PMID: 28659958
DOI: 10.3389/fpls.2017.01015

[…] and induced or repressed by the same conditions. therefore, we analyzed co-expression of corresponding genes between the 72 pairs of interactors and corresponding xlg genes using the online software cressexpress ( cressexpress performs linear regression using expression values harvested from publicly-available microarray data. we used version 3 containing 1779 arrays […]

PMCID: 4955032
PMID: 27499680
DOI: 10.2174/1389202917666160331201812

[…] genevestigator []. these data sources can be combined with several meta-analysis tools using a guilt-by-association principle to help visualise correlated gene expression, such as atted-ii [], and cressexpress []. the functional annotations in the gene's co-expression neighbourhood can then be used to hypothesise a biologically relevant relationship. using atted ver7.1 (, […]

PMCID: 4824202
PMID: 26868598
DOI: 10.1093/gbe/evw021

[…] expression was performed using mev 4.9.0 (, last accessed march 1, 2015)., the genes coexpressed with the llgs in a. thaliana were identified using the mas5 algorithm in cressexpress v3.2 (, last accessed march 1, 2015). the employed parameters were as follows: cutoff value for kolmogorov–smirnov quality-control statistic was 0.15, and r2 […]

PMCID: 4747569
PMID: 26859686
DOI: 10.1371/journal.pone.0148771

[…] are associated with a specific biological process in plants. in addition, several web-based databases for plant gene co-expression networks, including legumegrn [], cop [], planex [], plexdb [] and cressexpress [], have been developed to enable the visualization of gene-gene interrelationships, gene-specific expression profiles across stress conditions and data mining of co-expression networks […]

PMCID: 4687647
PMID: 26656917
DOI: 10.1371/journal.pone.0143881

[…] were analyzed. all primers used were listed in ., analyses to identify genes that were co-expressed with known flavonoids biosynthesis genes were performed using two different tools/datasets; cressexpress and a high-resolution root spatiotemporal (hrrs) dataset. for each analysis, 11 known flavonoids biosynthesis genes were used as query baits (). cressexpress, a co-expression analysis […]

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CressExpress institution(s)
Section on Statistical Genetics, Department of Biostatistics, University of Alabama, Birmingham, AL, USA

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