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CressExpress specifications

Information


Unique identifier OMICS_06060
Name CressExpress
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained Yes

Taxon


  • Plants and Fungi
    • Arabidopsis thaliana

Publication for CressExpress

CressExpress in pipeline

2011
PMCID: 3339426
PMID: 22078230
DOI: 10.1186/1756-0500-4-493

[…] map of s. tuberosum orthologous clusters to arabidopsis probesets). a program was written in perl to download the expression data from over 1700 arabidopsis affymetrix microarrays available at cressexpress []. vectors of each probeset in the affymetrix microarrays were created, including expression information from each microarray in the collection. each of the differentially expressed s. […]


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CressExpress in publications

 (18)
PMCID: 5469152
PMID: 28659958
DOI: 10.3389/fpls.2017.01015

[…] and induced or repressed by the same conditions. therefore, we analyzed co-expression of corresponding genes between the 72 pairs of interactors and corresponding xlg genes using the online software cressexpress (http://cressexpress.org/). cressexpress performs linear regression using expression values harvested from publicly-available microarray data. we used version 3 containing 1779 arrays […]

PMCID: 4955032
PMID: 27499680
DOI: 10.2174/1389202917666160331201812

[…] genevestigator []. these data sources can be combined with several meta-analysis tools using a guilt-by-association principle to help visualise correlated gene expression, such as atted-ii [], and cressexpress []. the functional annotations in the gene's co-expression neighbourhood can then be used to hypothesise a biologically relevant relationship. using atted ver7.1 (http://atted.jp/), […]

PMCID: 4824202
PMID: 26868598
DOI: 10.1093/gbe/evw021

[…] expression was performed using mev 4.9.0 (http://www.tm4.org/mev.html, last accessed march 1, 2015)., the genes coexpressed with the llgs in a. thaliana were identified using the mas5 algorithm in cressexpress v3.2 (http://cressexpress.org, last accessed march 1, 2015). the employed parameters were as follows: cutoff value for kolmogorov–smirnov quality-control statistic was 0.15, and r2 […]

PMCID: 4747569
PMID: 26859686
DOI: 10.1371/journal.pone.0148771

[…] are associated with a specific biological process in plants. in addition, several web-based databases for plant gene co-expression networks, including legumegrn [], cop [], planex [], plexdb [] and cressexpress [], have been developed to enable the visualization of gene-gene interrelationships, gene-specific expression profiles across stress conditions and data mining of co-expression networks […]

PMCID: 4687647
PMID: 26656917
DOI: 10.1371/journal.pone.0143881

[…] were analyzed. all primers used were listed in ., analyses to identify genes that were co-expressed with known flavonoids biosynthesis genes were performed using two different tools/datasets; cressexpress and a high-resolution root spatiotemporal (hrrs) dataset. for each analysis, 11 known flavonoids biosynthesis genes were used as query baits (). cressexpress, a co-expression analysis […]


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CressExpress institution(s)
Section on Statistical Genetics, Department of Biostatistics, University of Alabama, Birmingham, AL, USA

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