CREST pipeline

CREST specifications

Information


Unique identifier OMICS_00312
Name CREST
Alternative name Clipping REveals STructure
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for Clipping REveals STructure

CREST IN pipeline

2015
PMCID: 4477877
PMID: 26102509
DOI: 10.1371/journal.pgen.1005262

[…] (bam files) were jointly called for single nucleotide variants and insertion/deletions (indels) using the genome analysis toolkit (gatk) v.3.1 [53], while structural variations were detected using clipping reveals structure (crest) [37,54]. variant level annotations were performed using in-silico tools, such as annovar[55]. these annotations were used to predict the effects of identified […]

CREST institution(s)
Department of Information Sciences, St. Jude Children’s Research Hospital, Memphis, TN, USA; Department of Pathology, St. Jude Children’s Research Hospital, Memphis, TN, USA; Pediatric Cancer Genome Project, St Jude Children’s Research Hospital, Memphis, TN, USA; Department of Computational Biology, St. Jude Children’s Research Hospital, Memphis, TN, USA

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