caRpools specifications

Unique identifier:
OMICS_10464
Software type:
Package/Module
Restrictions to use:
None
Output data:
It provides diagnostic plots to evaluate screening performance, including read-count distribution and sequencing depth plots for each sample, as well as sgRNA coverage and evaluation of included control sgRNAs.
Programming languages:
R
Stability:
Stable
Name:
CRISPR-AnalyzeR for pooled screens
Interface:
Command line interface
Input data:
caRpools requires a FASTA file with sgRNA identifiers and sequences, FASTQ or processed sgRNA readcount files of samples, template files for report generation, and a parameter and screen description file.
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Maintained:
Yes

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

caRpools support

Documentation

Maintainer

  • Michael Boutros <>

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

German Cancer Research Center (DKFZ), Division Signaling and Functional Genomics and Heidelberg University, Heidelberg, Germany

Funding source(s)

This work was supported in part by an ERC Advanced Grant, an iMED grant and a DKFZ Postdoc Fellowship.

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

Related Tools