CRISPR-DAV specifications

Unique identifier:
OMICS_20326
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
FASTQ
Output format:
HTML
Programming languages:
Javascript, Perl, R
Computer skills:
Advanced
Stability:
Stable
Name:
CRISPR Data Analysis and Visualization
Interface:
Command line interface
Input data:
Files that describe software paths, parameters, amplicon, CRISPR sites and sources.
Output data:
A report that contains charts showing: read counts in various stages; read depths and indel frequencies in amplicon; counts and percentages of indel reads; frequencies of allele, SNP, and HDR; alignment view enabled with Canvas Xpress.
Operating system:
Unix/Linux, Mac OS
License:
MIT License
Version:
2.1.1
Maintained:
Yes

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CRISPR-DAV distribution

download

CRISPR-DAV support

Maintainer

  • Xuning Wang <>

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Publications

Institution(s)

Translational Bioinformatics & Computational Genomics, Bristol-Myers Squibb Co., Pennington, NJ, USA; Leads Discovery & Optimization, Bristol-Myers Squibb Co., Pennington, NJ, USA; Genome Biology, Bristol-Myers Squibb Co., Pennington, NJ, USA

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