CRISPR-DAV specifications

Information


Unique identifier OMICS_20326
Name CRISPR Data Analysis and Visualization
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Files that describe software paths, parameters, amplicon, CRISPR sites and sources.
Input format FASTQ
Output data A report that contains charts showing: read counts in various stages; read depths and indel frequencies in amplicon; counts and percentages of indel reads; frequencies of allele, SNP, and HDR; alignment view enabled with Canvas Xpress.
Output format HTML
Operating system Unix/Linux, Mac OS
Programming languages Javascript, Perl, R
License MIT License
Computer skills Advanced
Version 2.1.1
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Xuning Wang <>

CRISPR-DAV article

CRISPR-DAV institution(s)
Translational Bioinformatics & Computational Genomics, Bristol-Myers Squibb Co., Pennington, NJ, USA; Leads Discovery & Optimization, Bristol-Myers Squibb Co., Pennington, NJ, USA; Genome Biology, Bristol-Myers Squibb Co., Pennington, NJ, USA

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