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CRISPR detection software tools | Shotgun metagenomic sequencing data analysis

Clustered regularly interspaced short palindromic repeats (CRISPR) constitute a bacterial and archaeal adaptive immune system that protect against bacteriophage (phage). Analysis of CRISPR loci reveals the history of phage infections and provides a…
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Crass
Desktop

Crass CRISPR Assembler

Identifies and reconstructs CRISPR loci from raw metagenomic data without the…

Identifies and reconstructs CRISPR loci from raw metagenomic data without the need for assembly or prior knowledge of CRISPR in the data set. CRISPR in assembled data are often fragmented across many…

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metaCRISPR
Desktop

metaCRISPR

Finds clustered regularly interspaced short palindromic repeats and associated…

Finds clustered regularly interspaced short palindromic repeats and associated proteins (CRISPR) for metagenomic data without relying on generic assembly. It identifies and assembles sequences of…

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CRISPRAlign
Desktop

CRISPRAlign

A software tool for identifying CRISPRs in a target sequence (a genome or a…

A software tool for identifying CRISPRs in a target sequence (a genome or a contig) that has repeats similar to a given CRISPR. CRISPRAlign works by first detecting substrings in the target sequence…

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metaCRT
Desktop

metaCRT

CRT is a tool for fast, de novo identification of CRISPRs in long DNA…

CRT is a tool for fast, de novo identification of CRISPRs in long DNA sequences. CRT works by first detecting repeats that are separated by a similar distance, and then checking for other CRISPR…

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