CRISPRDetect pipeline

CRISPRDetect specifications

Information


Unique identifier OMICS_12234
Name CRISPRDetect
Interface Web user interface
Restrictions to use None
Programming languages Perl
Computer skills Basic
Version 2.1
Stability Stable
Maintained Yes

Documentation


Maintainer


Information


Unique identifier OMICS_12234
Name CRISPRDetect
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Version 2.1
Stability Stable
Maintained Yes

Versioning


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Documentation


Maintainer


Publication for CRISPRDetect

CRISPRDetect IN pipeline

2018
PMCID: 5883640
PMID: 29615108
DOI: 10.1186/s40168-018-0452-1

[…] covering more than 5% of the query were retained. whole genome dotplots were realized with gepard [49], using a length of 11 nt for minimal exact matches. crispr spacers were searched for with crisprdetect [50], using default parameters., for each prophage pair to be compared, all proteins of the first phage were compared to the proteins of the second one (blastp, e value < 10−3), […]

CRISPRDetect institution(s)
Department of Biochemistry, University of Otago, Dunedin, New Zealand; Department of Microbiology and Immunology, University of Otago, Dunedin, New Zealand; Genetics Otago, University of Otago, Dunedin, New Zealand

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