CRISPRdigger specifications

Information


Unique identifier OMICS_15036
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A genome sequence.
Input format FASTA
Output data The position annotations and sequences of the DR signals, spacers and complete CRISPRs.
Output format TXT, GFF3
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Version 1.007
Stability Stable
Requirements BioPerl
Maintained Yes

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Maintainer


  • person_outline Fengfeng Zhou <>

CRISPRdigger article

CRISPRdigger institution(s)
Shenzhen Institutes of Advanced Technology, and Key Lab for Health Informatics, Chinese Academy of Sciences, Shenzhen, Guangdong, China; Shenzhen College of Advanced Technology, University of Chinese Academy of Sciences, Shenzhen, Guangdong, China; Center for Synthetic Biology Engineering Research, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong, China; School of Science, Hubei University of Technology, Wuhan, Hubei, China; College of Computer Science and Technology, Changchun, Jilin, China; Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, Changchun, Jilin, China
CRISPRdigger funding source(s)
This work was supported by Shenzhen grants JCYJ20140417113430655, JCYJ20140417113430619, CXZZ20140417113430629, and CXZZ20150504145109589, the NSFC grant 11471313, and the CAS grant KFJ-EW-STS-095, the China 863 program (SS2015AA020109-4) and a startup grant from the Jilin University.

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