CRISPRdigger specifications

Unique identifier:
OMICS_15036
Interface:
Command line interface
Input data:
A genome sequence.
Output data:
The position annotations and sequences of the DR signals, spacers and complete CRISPRs.
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
FASTA
Output format:
TXT, GFF3
Programming languages:
Perl
Version:
1.007
Requirements:
BioPerl

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CRISPRdigger distribution

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CRISPRdigger support

Maintainer

  • Fengfeng Zhou <>

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Publications

Institution(s)

Shenzhen Institutes of Advanced Technology, and Key Lab for Health Informatics, Chinese Academy of Sciences, Shenzhen, Guangdong, China; Shenzhen College of Advanced Technology, University of Chinese Academy of Sciences, Shenzhen, Guangdong, China; Center for Synthetic Biology Engineering Research, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong, China; School of Science, Hubei University of Technology, Wuhan, Hubei, China; College of Computer Science and Technology, Changchun, Jilin, China; Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, Changchun, Jilin, China

Funding source(s)

This work was supported by Shenzhen grants JCYJ20140417113430655, JCYJ20140417113430619, CXZZ20140417113430629, and CXZZ20150504145109589, the NSFC grant 11471313, and the CAS grant KFJ-EW-STS-095, the China 863 program (SS2015AA020109-4) and a startup grant from the Jilin University.

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