CRISPResso specifications

Unique identifier:
OMICS_10601
Interface:
Command line interface
Input data:
CRISPResso requires two inputs: (1) paired-end reads (two files) or single-end reads (single file) in .fastq format (fastq.gz files are also accepted) from a deep sequencing experiment and (2) a reference amplicon sequence to assess and quantify the efficiency of the targeted mutagenesis.
Computer skills:
Advanced
Requirements:
Python, Anaconda, Java, C compiler/make
Software type:
Pipeline/Workflow
Restrictions to use:
None
Operating system:
Unix/Linux
Stability:
Stable
Maintained:
Yes

versioning

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CRISPResso distribution

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CRISPResso specifications

Unique identifier:
OMICS_10601
Restrictions to use:
None
Computer skills:
Basic
Maintained:
Yes
Interface:
Web user interface
Input data:
CRISPResso requires two inputs: (1) paired-end reads (two files) or single-end reads (single file) in .fastq format (fastq.gz files are also accepted) from a deep sequencing experiment and (2) a reference amplicon sequence to assess and quantify the efficiency of the targeted mutagenesis.
Stability:
Stable

CRISPResso support

Maintainer

  • Guo-Cheng Yuan <>
  • Guo-Cheng Yuan <>

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Credits

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Publications

Institution(s)

Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard School of Public Health, Boston, MA, USA

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