CRISPResso specifications

Information


Unique identifier OMICS_10601
Name CRISPResso
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Paired-end reads (two files) or single-end reads (single file) from a deep sequencing experiment and a reference amplicon sequence.
Input format FASTQ
Output data A set of informative graphs that allow for the quantification and visualization of the position and type of outcomes within an amplicon sequence.
Operating system Unix/Linux
Programming languages Python
License GNU Affero General Public License version 3
Computer skills Advanced
Stability Stable
Requirements Java, C compiler / make
Maintained Yes

Subtools


  • CRISPRessoCompare
  • CRISPRessoPooled
  • CRISPRessoPooledCompare
  • CRISPRessoWGS

Download


Versioning


Add your version

Documentation


Maintainers


  • person_outline Guo-Cheng Yuan <>
  • person_outline Luca Pinello <>
  • person_outline Daniel Bauer <>

Information


Unique identifier OMICS_10601
Name CRISPResso
Interface Web user interface
Restrictions to use None
Input data Paired-end reads (two files) or single-end reads (single file) from a deep sequencing experiment and a reference amplicon sequence.
Input format FASTQ
Computer skills Basic
Stability Stable
Maintained Yes

Subtools


  • CRISPRessoCompare
  • CRISPRessoPooled
  • CRISPRessoPooledCompare
  • CRISPRessoWGS

Download


Documentation


Maintainers


  • person_outline Guo-Cheng Yuan <>
  • person_outline Luca Pinello <>
  • person_outline Daniel Bauer <>

Publications for CRISPResso

CRISPResso institution(s)
Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard School of Public Health, Boston, MA, USA; Division of Hematology/Oncology, Boston Children’s Hospital, Department of Pediatric Oncology, Dana-Farber Cancer Institute, Harvard Stem Cell Institute, Department of Pediatrics, Harvard Medical School, Boston, MA, USA; Department of Microbiology, Immunology, and Molecular Genetics, Eli & Edythe Broad Center of Regenerative Medicine & Stem Cell Research, University of California, Los Angeles, Los Angeles, CA, USA; Howard Hughes Medical Institute, Boston, MA, USA
CRISPResso funding source(s)
Supported by NHGRI Career Development Award K99HG008399, F30DK103359-01A1, P01HL032262, P30DK049216 (Center of Excellence in Molecular Hematology), NIDDK Career Development Award K08DK093705, Doris Duke Charitable Foundation, Charles H. Hood Foundation, Cooley’s Anemia Foundation, American Society of Hematology, Burroughs Wellcome Fund, NIH R01HL119099 and R01HG005085.

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