CRISPRmap pipeline

CRISPRmap specifications

Information


Unique identifier OMICS_03716
Name CRISPRmap
Interface Web user interface
Restrictions to use None
Input data CRISPR sequence(s) (repeat sequence only)
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Publications for CRISPRmap

CRISPRmap IN pipeline

2017
PMCID: 5398294
PMID: 28379509
DOI: 10.1093/gbe/evx062

[…] (makarova et al. 2011). in each crispr type, consensus sequences of all repeat sequences were determined using weblogo v3.3 (crooks et al. 2004). the repeat sequences were further analyzed using crisprmap v3.1.5 to characterize their directions (lange et al. 2013). the phage-like structures in the crisprs were identified using both nucleotide sequence similarity with the reported phage […]

CRISPRmap institution(s)
Bioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Freiburg, Germany; ZBSA Centre for Biological Systems Analysis, Albert-Ludwigs-University Freiburg, Freiburg, Germany; BIOSS Centre for Biological Signalling Studies, Cluster of Excellence, Albert-Ludwigs-University Freiburg, Germany; Center for non-coding RNA in Technology and Health, University of Copenhagen, Frederiksberg C, Denmark

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