CRISPRone specifications
- Unique identifier:
- OMICS_15622
- Restrictions to use:
- None
- Input format:
- FASTA, GFF
- Output format:
- TXT
- Stability:
- Stable
- Interface:
- Web user interface
- Input data:
- Users can upload a sequence file. As an option, he can also provide gene information.
- Output data:
- CRISPRone will report the CRISPR-Cas system prediction results for each sequence. A sequence may contain both CRISPR array(s) and cas genes, or CRISPR array(s) only, or cas gene(s) only, or none of them.
- Computer skills:
- Basic
- Maintained:
- Yes
CRISPRone support
Documentation
- Documentation: http://omics.informatics.indiana.edu/CRISPRone/help.php
Maintainer
- Yuzhen Ye <>
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Publications
-
(Zhang and Ye, 2017)
Not all predicted CRISPR-Cas systems are equal: isolated cas genes and classes of CRISPR like elements.
BMC Bioinformatics.
PMID: 28166719 DOI: 10.1186/s12859-017-1512-4
Institution(s)
School of Informatics and Computing, Indiana University, Bloomington, IN, USA
Funding source(s)
This work has been supported by the National Science Foundation (grant number: DBI-1262588) and National Institutes of Health (grant number: 1R01AI108888).
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