cropPAL specifications

Information


Unique identifier OMICS_11793
Name cropPAL
Alternative name crop Proteins with Annotated Locations
Restrictions to use None
Database management system MySQL
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Taxon


  • Plants and Fungi
    • Hordeum vulgare
    • Oryza sativa
    • Triticum aestivum
    • Zea mays

Maintainer


  • person_outline Cornelia M. Hooper

Publication for crop Proteins with Annotated Locations

cropPAL citation

library_books

LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell

2017
Sci Rep
PMCID: 5353544
PMID: 28300209
DOI: 10.1038/srep44598

[…] of plant proteins with experimentally validated transit peptides in the UniProt database, we could not use parts of our training set as independent test sets. Therefore, we took the manually curated cropPAL database which features the subcellular localization of rice, wheat, maize and barley proteins. We used only those proteins that are supported by GFP studies and localize to one subcellular co […]

cropPAL institution(s)
ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia, Crawley, WA, Australia
cropPAL funding source(s)
The Australian National Data Service (ANDS) [through the National Collaborative Research Infrastructure Strategy Program, as well as through the ARC Centre of Excellence in Plant Energy Biology (CE140100008)]; an ARC Future Fellow (FT110100242)

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