CrossMap protocols

CrossMap specifications

Information


Unique identifier OMICS_02184
Name CrossMap
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C, Python
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for CrossMap

CrossMap IN pipeline

2017
PMCID: 5703645
PMID: 29083303
DOI: 10.7554/eLife.27860.083

[…] et al., 2012; gao et al., 2015). sites were mapped to hg38 using a chain file from the ucsc genome browser (http://hgdownload.soe.ucsc.edu/goldenpath/hg19/liftover/hg19tohg38.over.chain.gz) and crossmap v0.1.6 (rrid:scr_001173). similar to the methods used in these studies, an altorf is considered as having an active tis if it is associated with at least ten reads at one of the seven […]

CrossMap institution(s)
Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; Division of Biomedical Statistics and Informatics, Mayo Clinic College of Medicine, Chinahester, MN, USA; Department of Biochemistry and Molecular Biology, Mayo Clinic College of Medicine, Chinahester, MN, USA

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