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Chromosomal rearrangement databases | Genome variation analysis

A chromosomal rearrangement (CR) event occurs as a consequence of double-strand breaks (DSBs) of the DNA, followed by abnormal rejoining of the non-homologous ends, producing a new chromosomal arrangement (van Gent et al., 2001). Alternatively, a CR…
OMIM
Dataset

OMIM Online Mendelian Inheritance in Man

A comprehensive, authoritative and timely research resource of curated…

A comprehensive, authoritative and timely research resource of curated descriptions of human genes and phenotypes and the relationships between them. OMIM® is based on the published peer-reviewed…

Mitelman Database
Dataset
ChimerDB
Dataset

ChimerDB

Offers fusion genes encompassing analysis of deep sequencing data and manual…

Offers fusion genes encompassing analysis of deep sequencing data and manual curations. ChimerDB is composed of three modules: ChimerKB, ChimerPub and ChimerSeq. ChimerKB represents a knowledgebase…

DECIPHER
Dataset

DECIPHER DatabasE of Genomic variants and Phenotype in Humans Using Ensembl Resources

An accessible online repository of genetic variation with associated phenotypes…

An accessible online repository of genetic variation with associated phenotypes that facilitates the identification and interpretation of pathogenic genetic variation in patients with rare disorders.…

ChiTaRS
Dataset

ChiTaRS

Offers chimeric transcripts and RNA-seq matched with protein-protein…

Offers chimeric transcripts and RNA-seq matched with protein-protein interactions. ChiTaRS database is designed to make widely accessible a wealth of mined data on chimeric RNAs, with easy-to-use…

Atlas of…
Dataset

Atlas of Genetics and Cytogenetics in Oncology and Haematology

A peer-reviewed internet journal/encyclopaedia/database focused on genes…

A peer-reviewed internet journal/encyclopaedia/database focused on genes implicated in cancer, cytogenetics and clinical entities in cancer and cancer-prone hereditary diseases.

FusionDB
Dataset

FusionDB

Constitutes a resource dedicated to in-depth analysis of bacterial and archaeal…

Constitutes a resource dedicated to in-depth analysis of bacterial and archaeal gene fusion events. FusionDB reduces the number of false positives, at the expense of a potentially similarly high…

dbCRID
Dataset

dbCRID database of Chromosomal Rearrangements In Diseases

Documents the type of the event, the disease or symptoms associated, and…

Documents the type of the event, the disease or symptoms associated, and detailed information about the chromosomal rearrangement (CR) event including precise breakpoint positions, junction…

BreCAN-DB
Dataset

BreCAN-DB BREakpoint profiles of CANcer genomes DataBase

A browsable repository of personalized cancer DNA breakpoint profiles mapped…

A browsable repository of personalized cancer DNA breakpoint profiles mapped over the entire genomes of 99 cancer and matched control pairs from five cancer types viz. glioblastoma multiforme (GBM),…

TICdb
Dataset

TICdb

A database that describes the genomic location of 1,374 translocation…

A database that describes the genomic location of 1,374 translocation breakpoints in human tumors, corresponding to 431 different genes. TICdb is highly curated and all breakpoints are located to…

ChromothripsisD…
Dataset

ChromothripsisDB

A manually curated database containing a unified description of all published…

A manually curated database containing a unified description of all published chromothripsis cases and relevant genomic aberrations. Currently, 423 chromothripsis samples representing 107 research…

SKY/M-FISH &…
Dataset

SKY/M-FISH & CGH Database

Provides a public platform for investigators to share and compare their…

Provides a public platform for investigators to share and compare their molecular cytogenetic data. SKY/M-FISH & CGH Database is open to everyone and all users can view an individual…

ConjoinG
Dataset

ConjoinG

Contains detailed information about all the conjoined genes identified in the…

Contains detailed information about all the conjoined genes identified in the human genome. ConjoinG is a specialized resource to visualize, examine, and study the characteristics of these genes.

FusionCancer
Dataset

FusionCancer

A comprehensive fusion gene database derived only from cancer RNA-seq data.…

A comprehensive fusion gene database derived only from cancer RNA-seq data. FusionCancer provides a user-friendly utility for the cancer research community. A flexible query engine has been developed…

BrassiBase
Dataset

BrassiBase

An online database system of cross-referenced information and resources on…

An online database system of cross-referenced information and resources on Brassicaceae taxonomy, systematics, evolution, traits and germplasm resources. Biological material and resources, either…

CytoD
Dataset

CytoD Cytogenetics Database

A database for identifying cytogenetic abnormalities. CytoD contains 17,510…

A database for identifying cytogenetic abnormalities. CytoD contains 17,510 abstracts from PubMed. These abstracts are determined to be related to cytogenetics because they contain standard…

DACRO
Dataset

DACRO Disease-Associated Chromosomal Rearrangements Online

A simple, searchable database of all published chromosomal rearrangements that…

A simple, searchable database of all published chromosomal rearrangements that are associated with an abnormal phenotype.

HYBRIDdb
Dataset

HYBRIDdb

A database which provides detailed information regarding the exploration of a…

A database which provides detailed information regarding the exploration of a specific hybrid gene of interest. HYBRIDdb encompasses the bioinformatics analysis of mRNA, EST, cDNA and can be used to…

FARE-CAFE
Dataset

FARE-CAFE

A database of functional and regulatory elements of cancer-associated fusion…

A database of functional and regulatory elements of cancer-associated fusion events. FARE-CAFE is a database with the combination of the cancer related chromosomal translation events, fusion genes,…

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