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Protocols

CRSD specifications

Information


Unique identifier OMICS_24750
Name CRSD
Alternative name Composite Regulatory Signature Discovery
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained No

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Publication for Composite Regulatory Signature Discovery

CRSD citations

 (4)
call_split

Quantification of Intramyocardial Metabolites by Proton Magnetic Resonance Spectroscopy

2015
PMCID: 4671339
PMID: 26664896
DOI: 10.3389/fcvm.2015.00024
call_split See protocol

[…] frequencies, and when the Lorentzian curve fitting by jMRUI could not be performed. To determine the adequacy and accuracy of the fitted signal amplitude, the relative Cramer–Rao standard deviation (CRSD) was calculated as previously published (). The CRSD was determined using the AMARES algorithm, and then divided by the lipid signal amplitude. This generates a relative CRSD, which is inversely […]

library_books

Rapid Quantification of Myocardial Lipid Content in Humans Using Single Breath Hold 1H MRS at 3 Tesla

2011
Magn Reson Med
PMCID: 3427889
PMID: 21721038
DOI: 10.1002/mrm.23011

[…] domain signal intensity to the noise SD extracted from the final 100 points of the signal in the time domain. Also, an estimate of the SNR was obtained by dividing the Cramer-Rao standard deviation (CRSD) of the lipid peak, which is an indicator of the accuracy of the spectral quantification provided by the AMARES fitting algorithm, by the lipid peak amplitude and converted to a percentage (rCRSD […]

library_books

GeneTrailExpress: a web based pipeline for the statistical evaluation of microarray experiments

2008
BMC Bioinformatics
PMCID: 2627893
PMID: 19099609
DOI: 10.1186/1471-2105-9-552

[…] been implemented over the past years []. The long list of published programs includes FatiGO [], BiNGO [], and GOstat [] that analyze only enriched Gene Ontologies []. For microarry data, ErmineJ [], CRSD [], or GSEA-P [] have been proposed. Other tools allow for the analysis of arbitrary experimental data (e.g. WebGestalt [], Babelomics [], or GeneTrail). Another class of approaches focuses on th […]

library_books

CoMoDis: composite motif discovery in mammalian genomes

2006
Nucleic Acids Res
PMCID: 1702496
PMID: 17130158
DOI: 10.1093/nar/gkl839

[…] seed motifs in the vicinity of these genes and streamlines downstream motif discovery. CoMoDis has some similarities to a number of other tools, notably the Composite Module Analyst (,), POXO () and CRSD (). All three of these web accessible tools accept lists of coregulated genes and attempt to generate hypotheses about the factors controlling their common expression pattern, including TFBSs and […]


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CRSD institution(s)
Department of Computer Science, National Chung-Hsing University, Taichung, Taiwan; Institutes of Biomedical Sciences and Molecular Biology, National Chung-Hsing University, Taichung, Taiwan; Graduate Institute of Epidemiology, National Taiwan University, Taipei, Taiwan; Departments of Biotechnology and Bioinformatics, Asia University, Taichung, Taiwan; NTU Center for Genomic Medicine, National Taiwan University College of Medicine, Taipei, Taiwan
CRSD funding source(s)
Supported by the National Chung-Hsing University Biotechnology Center through the Teaching Core Facility Project grant.

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