CRuMPIT specifications

Information


Unique identifier OMICS_24095
Name CRuMPIT
Alternative name Clinincal Real-time Metagenomics Pathogen Identification Test
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements
nextflow, mongoDB
Source code URL https://gitlab.com/ModernisingMedicalMicrobiology/CRuMPIT/repository/master/archive.zip
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Nicholas Sanderson

Publication for Clinincal Real-time Metagenomics Pathogen Identification Test

CRuMPIT institution(s)
Nuffield Department of Clinical Medicine, University of Oxford, John Radcliffe Hospital, Oxford, UK; National Institute for Health Research Oxford Biomedical Research Centre, John Radcliffe Hospital, Oxford, UK; Bone Infection Unit, Nuffield Orthopaedic Centre, Oxford University Hospital NHS Foundation Trust, Oxford, UK; Microbiology Laboratory, John Radcliffe Hospital, Oxford University, Hospitals NHS Foundation Trust, Oxford, UK
CRuMPIT funding source(s)
Supported by the National Institute for Health Research (NIHR) Oxford Biomedical Research Centre (BRC).

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