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cryo-EM software tools | Bioimaging

Bioimaging software tools

Cryo-EM is an important technique in structural biology used to solve large protein complex and subcellular structures.

Electron Microscopy Pilot Image Archive

OMIC_11376

Electron Microscopy Pilot Image Archive
EMPIAR

A public resource for raw, 2D electron microscopy images. You can browse, upload,…

A public resource for raw, 2D electron microscopy images. You can browse, upload, download and reprocess the thousands of raw, 2D images used to build a 3D structure. The purpose of EMPIAR is to provide easy access to state-of-the-art raw data to…

EM-SURFER

OMIC_08962

EM-SURFER

A web-based tool for real-time comparison and analysis of electron microscopy (EM)…

A web-based tool for real-time comparison and analysis of electron microscopy (EM) density maps. EM-SURFER compares the shape of EM map isosurfaces, generated using author-recommended contour values. Users can either upload an EM map or choose an…

EMDataBank

OMIC_08960

EMDataBank

A unified global portal for deposition and retrieval of 3DEM density maps, atomic models,…

A unified global portal for deposition and retrieval of 3DEM density maps, atomic models, and associated metadata, as well as a resource for news, events, software tools, data standards, validation methods for the 3DEM community. EMDataBank unifies…

EMRinger

OMIC_09774

EMRinger

A tool that assesses the precise fitting of an atomic model into the map during…

A tool that assesses the precise fitting of an atomic model into the map during refinement and shows how radiation damage alters scattering from negatively charged amino acids. EMRinger is useful for monitoring progress in resolving and modeling…

Localize.pytom

OMIC_08961

Localize.pytom

A webserver for the localize module in the PyTom package. Localize.pytom is a free…

A webserver for the localize module in the PyTom package. Localize.pytom is a free website and open to all users and there is no login requirement. The server accepts tomograms as they are imaged and reconstructed by Cryo-Electron Tomography (CET)…