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Protocols

CRYSOL specifications

Information


Unique identifier OMICS_10454
Name CRYSOL
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data As an input one can use a PDB file with an X-ray or NMR structure of a protein or a protein-DNA (RNA) complex.
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Version 2.8.2
Stability Stable
Requirements
ATSAS
Maintained Yes

Versioning


No version available

Information


Unique identifier OMICS_10454
Name CRYSOL
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data As an input one can use a PDB file with an X-ray or NMR structure of a protein or a protein-DNA (RNA) complex.
Computer skills Basic
Version 2.8.2
Stability Stable
Maintained Yes

Publications for CRYSOL

CRYSOL citations

 (419)
library_books

Structural basis for the recognition of complex type N glycans by Endoglycosidase S

2018
Nat Commun
PMCID: 5951799
PMID: 29760474
DOI: 10.1038/s41467-018-04300-x

[…] paring the curves obtained from the three different concentrations. Scattering curves at multiple concentrations were then scaled and merged into a single scattering curve for further analysis. Using CRYSOL, we fitted the SAXS data in the presence and absence of the oligosaccharide G2 product to the solution-scattering profile calculated from the crystal structure (6EN3). Analyses of potential con […]

call_split

Consensus Bayesian assessment of protein molecular mass from solution X ray scattering data

2018
Sci Rep
PMCID: 5940760
PMID: 29739979
DOI: 10.1038/s41598-018-25355-2
call_split See protocol

[…] es of the observed evidence P(E|H), in other words, converting a single MM to a probability distribution. This procedure is conceptualized in Fig. . Here, the actual MMs (as calculated by the program CRYSOL) that correspond to an estimate of MMMMQp = 50 kDa are coloured in red. These values are subsequently binned (see below) to produce a probability distribution (inset Fig. ). This procedure is r […]

library_books

Molecular mechanism of influenza A NS1 mediated TRIM25 recognition and inhibition

2018
Nat Commun
PMCID: 5940772
PMID: 29739942
DOI: 10.1038/s41467-018-04214-8

[…] r and the linker were allowed to move freely. The third calculation allowed free movement of both PRYSPRY domains including the linker. Each pool of 5000 structures was fitted against SAXS data using CRYSOL. […]

call_split

Structural basis of epilepsy related ligand–receptor complex LGI1–ADAM22

2018
Nat Commun
PMCID: 5906670
PMID: 29670100
DOI: 10.1038/s41467-018-03947-w
call_split See protocol

[…] u123 of the other LGI1. A simulated annealing protocol was employed to minimize the difference between the experimental and theoretical scattering curves. This fitting was performed using the program CRYSOL. […]

call_split

A switch point in the molecular chaperone Hsp90 responding to client interaction

2018
Nat Commun
PMCID: 5902578
PMID: 29662162
DOI: 10.1038/s41467-018-03946-x
call_split See protocol

[…] P(R)s of mixtures of ‘closed’ and ‘open’ Hsp90 conformations, the experimental P(R) of ‘open’ Hsp90 and the P(R) back-calculated for the ‘closed’ form of Hsp90 complexes (PDB 2CG9), using the program Crysol were normalized and combined at different ratios. […]

call_split

Conformational sampling of membranes by Akt controls its activation and inactivation

2018
Proc Natl Acad Sci U S A
PMCID: 5924885
PMID: 29632185
DOI: 10.1073/pnas.1716109115
call_split See protocol

[…] (). The models were aligned, averaged, and filtered using DAMAVER (). The structure of Akt11−443 in complex with inhibitor VIII (PDB ID code 3O96) was compared with the scattering of Akt1DrLink using CRYSOL () and superimposed with the refined ab initio envelope using SUPCOMB (). For Akt1DA, rigid body modeling was performed using CORAL (), with PDB ID code 1UNP (PH domain) and PDB ID code 4EKK (c […]

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CRYSOL institution(s)
European Molecular Biology Laboratory, Hamburg, Germany

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