CS-AMPPred statistics

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Citations per year

Number of citations per year for the bioinformatics software tool CS-AMPPred
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CS-AMPPred specifications

Information


Unique identifier OMICS_17498
Name CS-AMPPred
Software type Toolkit/Suite
Interface Graphical user interface
Restrictions to use None
Input data FASTA
Operating system Unix/Linux
Programming languages Perl
License GNU General Public License version 3.0
Computer skills Medium
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Octavio Franco

Publication for CS-AMPPred

CS-AMPPred citations

 (2)
library_books

Comparative transcriptomic analysis indicates genes associated with local and systemic resistance to Colletotrichum graminicola in maize

2017
Sci Rep
PMCID: 5449407
PMID: 28559543
DOI: 10.1038/s41598-017-02298-8

[…] nsmembrane domains was predicted by Phobius. Sequences obtained confirmed the annotation in InterProScan, considering the larger domain for the annotation. The antimicrobial activity was predicted by CS-AMPPred. Retrieval of the α-harpinin class was carried out by local sequence alignment (NCBI BLASTP against the same database, using the public MBP-1 peptide as query sequence. […]

library_books

Shedding Some Light over the Floral Metabolism by Arum Lily (Zantedeschia aethiopica) Spathe De Novo Transcriptome Assembly

2014
PLoS One
PMCID: 3948674
PMID: 24614014
DOI: 10.1371/journal.pone.0090487

[…] e largest domain signature was chosen as the actual domain. Thereafter sequences with tails longer than 30 amino acid residues were removed. Subsequently all the remaining sequences were submitted to CS-AMPPred , for antimicrobial activity prediction, where the sequences positively predicted in two or three CS-AMPPred models were selected. The software CS-AMPPred is a model of support vector mach […]


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CS-AMPPred institution(s)
Centro de Analises Proteomicas e Bioquımicas, Pos-Graduacao em Ciencias Genomicas e Biotecnologia Universidade Catolica de Brasılia, Brasılia-DF, Brazil
CS-AMPPred funding source(s)
This work was supported by CNPq (Conselho Nacional de Desenvolvimento Cientıfico e Tecnologico); CAPES (Coordenacao de Aperfeicoamento de Pessoal de Nıvel Superior); FAPDF (fundacao de Amparo a Pesquisa do Distrito Federal) and UCB (Universidade Catolica de Brasılia).

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