CS-AMPPred specifications

Information


Unique identifier OMICS_17498
Name CS-AMPPred
Software type Toolkit/Suite
Interface Graphical user interface
Restrictions to use None
Input data FASTA
Operating system Unix/Linux
Programming languages Perl
License GNU General Public License version 3.0
Computer skills Medium
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Octavio Franco <>

Publication for CS-AMPPred

CS-AMPPred in publications

 (2)
PMCID: 5449407
PMID: 28559543
DOI: 10.1038/s41598-017-02298-8

[…] a characteristic domain. furthermore, 18 sequences containing tails in n or c-terminal larger than 20 amino acid residues around the active domain were excluded from screening. according to cs-amppred, which ranks antimicrobial activity based on five sequence descriptors, only 9 peptides do not have putative antimicrobial activity, and all of them were removed from analysis. […]

PMCID: 3948674
PMID: 24614014
DOI: 10.1371/journal.pone.0090487

[…] six lipid transfer proteins (ltp), three snakin/gasa proteins and one chimerolectin containing a hevein domain as potential amps. finally, only three potential ltps presented positive prediction by cs-amppred, here identified as za-ltp1, za-ltp2 and za-ltp3. however, the cysteine-rich patterns proposed by silverstein et al. for ltps are not very restrictive, and embrace 2s albumins and eca1 […]


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CS-AMPPred institution(s)
Centro de Analises Proteomicas e Bioquımicas, Pos-Graduacao em Ciencias Genomicas e Biotecnologia Universidade Catolica de Brasılia, Brasılia-DF, Brazil
CS-AMPPred funding source(s)
This work was supported by CNPq (Conselho Nacional de Desenvolvimento Cientıfico e Tecnologico); CAPES (Coordenacao de Aperfeicoamento de Pessoal de Nıvel Superior); FAPDF (fundacao de Amparo a Pesquisa do Distrito Federal) and UCB (Universidade Catolica de Brasılia).

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