CSAR specifications

Information


Unique identifier OMICS_20794
Name CSAR
Alternative names Contig Scaffolding tool using Algebraic Rearrangements, CSAR-web
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages PHP
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements MUMmer
Maintained Yes

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Maintainers


  • person_outline Chin Lung Lu <>
  • person_outline Hsien-Tai Chiu <>

Additional information


https://lu168.cs.nthu.edu.tw/CSAR-web/index.php#help

Information


Unique identifier OMICS_20794
Name CSAR
Alternative names Contig Scaffolding tool using Algebraic Rearrangements, CSAR-web
Interface Web user interface
Restrictions to use None
Input data A target genome and a reference genome.
Input format FASTA, MULTI-FASTA
Output data The scaffolding result in a graphical mode.
Computer skills Basic
Stability Stable
Maintained Yes

Download


Maintainers


  • person_outline Chin Lung Lu <>
  • person_outline Hsien-Tai Chiu <>

Additional information


https://lu168.cs.nthu.edu.tw/CSAR-web/index.php#help

Publications for Contig Scaffolding tool using Algebraic Rearrangements

CSAR institution(s)
Department of Computer Science, National Tsing Hua University, Hsinchu, Taiwan
CSAR funding source(s)
Supported by Ministry of Science and Technology of Taiwan (in part) [MOST106-2221-E-007-117].

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