csaw specifications

Information


Unique identifier OMICS_10689
Name csaw
Software type Framework/Library, Package/Module
Interface Command line interface
Restrictions to use None
Input data A set of sorted and indexed files where each file contains aligned reads for one ChIP-seq sample.
Input format BAM
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.12.0
Stability Stable
Requirements GenomicRanges, SummarizedExperiment, BiocParallel
Maintained Yes

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Documentation


Maintainers


  • person_outline Gordon Smyth <>
  • person_outline Aaron Lun <>

Publication for csaw

csaw institution(s)
The Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia; Department of Medical Biology, The University of Melbourne, Parkville, VIC, Australia; Department of Mathematics and Statistics, The University of Melbourne, Parkville, VIC, Australia
csaw funding source(s)
Supported by The University of Melbourne (Elizabeth and Vernon Puzey scholarship); National Health and Medical Research Council Program Grant [1054618]; National Health and Medical Research Council Fellowship [1058892]; Victorian State Government Operational Infrastructure Support; and the Australian Government NHMRC IRIIS.

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