csaw specifications

Unique identifier:
OMICS_10689
Interface:
Command line interface
Input data:
A set of sorted and indexed files where each file contains aligned reads for one ChIP-seq sample.
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Version:
1.12.0
Requirements:
GenomicRanges, SummarizedExperiment, BiocParallel
Software type:
Framework/Library, Package/Module
Restrictions to use:
None
Input format:
BAM
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

versioning

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csaw distribution

download

csaw support

Documentation

Maintainers

  • Gordon Smyth <>
  • Aaron Lun <>

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Credits

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Publications

Institution(s)

The Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia; Department of Medical Biology, The University of Melbourne, Parkville, VIC, Australia; Department of Mathematics and Statistics, The University of Melbourne, Parkville, VIC, Australia

Funding source(s)

Supported by The University of Melbourne (Elizabeth and Vernon Puzey scholarship); National Health and Medical Research Council Program Grant [1054618]; National Health and Medical Research Council Fellowship [1058892]; Victorian State Government Operational Infrastructure Support; and the Australian Government NHMRC IRIIS.

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