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CSB.DB specifications


Unique identifier OMICS_11676
Alternative name Comprehensive Systems-Biology DataBase
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes


  • Bacteria
    • Escherichia coli
  • Plants and Fungi
    • Arabidopsis thaliana
    • Saccharomyces cerevisiae


  • person_outline Dirk Steinhauser

Publication for Comprehensive Systems-Biology DataBase

CSB.DB citations


Subcellular localization and trafficking of phytolongins (non SNARE longins) in the plant secretory pathway

J Exp Bot
PMCID: 4861013
PMID: 26962210
DOI: 10.1093/jxb/erw094

[…] ptor proteins, sedlins in TRAPP complexes, Rab GTPase exchange factors (GEF) and GEF multi-protein complexes, and the signal recognition particle receptor (; ). Microarrays/RNA-seq data analysis with CSB.DB (http://csbdb.mpimp-golm.mpg.de), KOBAS (http://kobas.cbi.pku.edu.cn), GeneMANIA (http://genemania.org/) and Genevestigator (http://genevestigator.com/gv/) indicate that the expression patterns […]


Co expression and co responses: within and beyond transcription

Front Plant Sci
PMCID: 3492870
PMID: 23162560
DOI: 10.3389/fpls.2012.00248

[…] in this species (; ; ; ; ). For this purpose, several web-based co-expression applications, for example ATTED-II (, ), AraNet (), Expression Angler of the Bio-Array Resource (BAR; ), CressExpress (), CSB.DB (), KappaViewer (), GeneCAT (), Genevestigator (), OryzaExpress (), and VirtualPlant () have been developed (Table ).One of the best examples of co-expression analysis in Arabidopsis is cellulo […]


Arabidopsis thaliana mTERF proteins: evolution and functional classification

Front Plant Sci
PMCID: 3471360
PMID: 23087700
DOI: 10.3389/fpls.2012.00233

[…] Furthermore, its co-expressed genes have no specified location (Figure , Tables and ). Additional databases were therefore, mined for co-expression data. The A. thaliana Co-Response Database on the CSB.DB web server (http://csbdb.mpimp-golm.mpg.de/csbdb/dbcor/ath.html; Steinhauser et al., ) returned no results for either MTERF22 or MTERF24, perhaps because transcripts of the selected genes were […]


Internet Resources for Gene Expression Analysis in Arabidopsis thaliana

Curr Genomics
PMCID: 2691667
PMID: 19506727
DOI: 10.2174/138920208785699535

[…] roarray Database (SMD) [,], Botany Array Resource now called Bio Array Resource (BAR) [], Gene Expression Omnibus (GEO) [], and Genevestigator []. Arabidopsis Coexpression Tool (ACT) [,], BAR [], the Comprehensive Systems-Biology Database (CSB.DB) [], and Genevestigator [] allow comparative gene analysis to detect clusters of genes with similar expression patterns across selected or the complete s […]

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CSB.DB institution(s)
Max Planck Institute of Molecular Plant Physiology, Golm, Germany

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