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CSB specifications

Information


Unique identifier OMICS_09827
Name CSB
Alternative name Computational Structural Biology Toolbox
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Ivan Kalev <>

Publication for Computational Structural Biology Toolbox

CSB in publications

 (2)
PMCID: 3797814
PMID: 24146881
DOI: 10.1371/journal.pone.0076512

[…] utility of our confidence-guided prediction strategy., the fragment filtering algorithm and the confidence-guided torsion angle predictor are implemented as an hhfrag extension in version 1.2 of the csb open-source sdk . an hhfrag web server is available at http://toolkit.tuebingen.mpg.de/hhfrag. the standalone executable, source code and python api are freely available for download […]

PMCID: 3797127
PMID: 24143202
DOI: 10.1371/journal.pone.0077074

[…] to obtain an all-vs-all matrix of similarity p-values. these p-values were extracted from the result files and converted to a clans input file using the bio.io.hhpred and bio.io.clans modules of csb, respectively . the cluster map was computed from the input file using the force-directed layouting method implemented in clans (attract and repulse value 10) at a p-value threshold of 1e-5 […]

CSB institution(s)
Department of Protein Evolution, Max Planck Institute for Developmental Biology, Tübingen, Germany
CSB funding source(s)
Contract research ‘Methoden in den Lebenswissenschaften’ of the Baden-Württemberg Stiftung, by Deutsche Forschungsgemeinschaft (DFG) grant HA 5918/1-1 and by the Max Planck Society

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