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|Alternative name||ClustScan database|
|Restrictions to use||None|
Publication for ClustScan database
The secondary metabolite bioinformatics portal: Computational tools to facilitate synthetic biology of secondary metabolite production
[…] can is a Java-based desktop application that offers mining for PKS and NRPS gene clusters in a convenient graphical user interface. ClustScan was used to compile and analyze the data contained in the ClustScan database (see below). NP.searcher is a web-based software program with an emphasis on structure prediction of the putative peptide or polyketide metabolites. NaPDoS uses BLAST and HMMer to i […]
Multilocus Sequence Analysis for Assessment of Phylogenetic Diversity and Biogeography in Thalassospira Bacteria from Diverse Marine Environments
[…] e robustness of the tree topologies. Additionally, phylogenies from distance matrix by neighbour-joining method the clustering tree based on the DDH was constructed with the web server (http://genome.csdb.cn/cgi-bin/emboss/fneighbor). […]
Tautomerism in large databases
[…] ce a much smaller number of generated tautomers can be expected. This is exactly what we found when we applied Epik to a small subset of 700 structures chosen to represent the tautomeric diversity in CSDB and compared the number of generated tautomers to the results of our approach. Such comparisons are therefore of limited relevance for the questions we tried to address in this study.The price fo […]
Structural insights into RNA dependent eukaryal and archaeal selenocysteine formation
[…] DRAWTREE in the Phylip 3.66 package (). A similar structure-based alignment was used for the structure-based sequence alignment shown in . First, SepSecS was structurally aligned to SepCysS, IscS and CsdB. This structure-based alignment was then supplemented with three additional SepSecS sequences, which had been previously aligned to MMPSepSecS with CLUSTAL (). Some alignment ambiguities were cor […]
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