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CSI:FingerID specifications


Unique identifier OMICS_27267
Name CSI:FingerID
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 1.1.2
Stability Stable
Maintained Yes


  • person_outline Sebastian Bocker

Publications for CSI:FingerID

CSI:FingerID citations


Promising Metabolite Profiles in the Plasma and CSF of Early Clinical Parkinson's Disease

PMCID: 5844983
PMID: 29556190
DOI: 10.3389/fnagi.2018.00051

[…] databases such as metlin and massbank (validation level 2) or against in silico fragmentation spectra (validation level 3) retrieved from metfrag (ruttkies et al., ), cfm-id (allen et al., ) and/or csi:fingerid (dührkop et al., ) with precursor mass accuracy of 20 ppm and fragment accuracy of 0.01 da. semi-quantitative metabolite intensities were calculated using the raw peak height., […]


Structure Elucidation of Unknown Metabolites in Metabolomics by Combined NMR and MS/MS Prediction

PMCID: 5875998
PMID: 29342073
DOI: 10.3390/metabo8010008

[…] in recent years. there are multiple publicly available software and web servers allowing the query of experimental lc-ms and lc-ms/ms data for identification of unknowns, including metfrag and csi:fingerid [,,]., the second strategy, on the other hand, relies on the nmr technique, in which the experimental chemical shifts of unknown metabolites are sequentially assigned and deconvoluted […]


Changes of Metabolomic Profile in Helianthus annuus under Exposure to Chromium(VI) Studied by capHPLC ESI QTOF MS and MS/MS

PMCID: 5735654
PMID: 29359067
DOI: 10.1155/2017/3568621

[…] ions. molecular formulas were assigned based on data processing with two computational tools (sirius and ms-finder); annotation of candidate structures was performed by database search using csi:fingerid and ms-finder. even though ultimate identification has not been achieved, it was demonstrated that secondary metabolism became activated under cr(vi) stress. among 42 candidate compounds […]


Mosquito larvicidal activity of Cassia tora seed extract and its key anthraquinones aurantio obtusin and obtusin

PMCID: 5681828
PMID: 29126433
DOI: 10.1186/s13071-017-2512-y

[…] ≤ 50; nitrogens ≤ 10; chlorines ≤ 10; sulfurs ≤ 10. the empirical formula generated was used to predict structures that were proposed based on the online database (metlin, chemspider and chemcalc, csi:fingerid), fragmentation pattern and literature [–]., mosquito larvicidal assay was carried out following standard procedure described by who [] and adopted by ndung’u et al. [–] […]


Current and Future Perspectives on the Structural Identification of Small Molecules in Biological Systems

PMCID: 5192452
PMID: 27983674
DOI: 10.3390/metabo6040046

[…] has been placed on developing novel in silico fragmentation and prediction algorithms resulting in a number of different approaches and software, competitive fragment modelling (cfm) [], magma [], csi:fingerid [] highchem mass frontier™ (bratislava, slovakia),and metfrag []. regular competitions through the critical assessment of small molecule identification (casmi) [] drive the development […]


Fast metabolite identification with Input Output Kernel Regression

PMCID: 4908330
PMID: 27307628
DOI: 10.1093/bioinformatics/btw246

[…] a test compound is said to be correctly identified if its correct structure is ranked first in the list., we compared the performances of our method with two competing methods: fingerid () and csi:fingerid. showed that csi:fingerid improved significantly the metabolite identification rate compared with competing methods including cfm-id (), metfrag (), magma (), midas () as well […]

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CSI:FingerID institution(s)
Chair for Bioinformatics, Friedrich-Schiller-University, Jena, Germany
CSI:FingerID funding source(s)
Supported by the Deutsche Forschungsgemeinschaft [BO 1910/20-1].

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