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CSPA specifications

Information


Unique identifier OMICS_09675
Name CSPA
Alternative name Cell Surface Protein Atlas
Restrictions to use None
Maintained Yes

Maintainer


  • person_outline Prof. Dr. Bernd Wollscheid

Publication for Cell Surface Protein Atlas

CSPA citations

 (45)
library_books

Draft Genome Sequence of Janthinobacterium sp. Strain ROICE36, a Putative Secondary Metabolite Synthesizing Bacterium Isolated from Antarctic Snow

2018
Genome Announc
PMCID: 5897808
PMID: 29650588
DOI: 10.1128/genomeA.01553-17

[…] t 5S rRNA genes. From the total number of CDSs, 2,470 genes were included in RAST subsystems, of which, 16 were involved in osmotic stress response and osmoregulation and 2 in cold stress adaptation (CspA protein family); 71 genes have roles in protection against oxidative stress. Additionally, 107 genes providing resistance to antibiotics (e.g., beta-lactams and fluoroquinolones) and toxic compou […]

library_books

Draft Genome Sequences of Acinetobacter and Bacillus Strains Isolated from Spacecraft Associated Surfaces

2018
Genome Announc
PMCID: 5805884
PMID: 29439046
DOI: 10.1128/genomeA.01554-17

[…] ssociated DNA repair protein (RecT), six genes associated with spore DNA protection, exodeoxyribonuclease III, and a peroxide stress regulator (PerR). Strain 1P01SCT had cold shock proteins (CspD and CspA) and a heat-inducible transcriptional repressor (HrcA).Acinetobacter strains 50v1 and 2P01AA possessed putative genes coding for persister cell formation, heat shock and cold shock responses, sup […]

library_books

Draft Genome Sequence of Zhihengliuella sp. Strain ISTPL4, a Psychrotolerant and Halotolerant Bacterium Isolated from Pangong Lake, India

2018
Genome Announc
PMCID: 5794947
PMID: 29437100
DOI: 10.1128/genomeA.01533-17

[…] the tricarboxylic acid cycle, the pentose phosphate pathway, carbohydrate metabolism, and amino acid biosynthesis. The genome was also predicted to have genes related to cold shock proteins (such as cspA), pyruvate dehydrogenase (aceE and aceF), phosphatidate cytidylyltransferase (csdA), ribosome-binding factor A (rbfA), transcription termination/antitermination protein (nusA), and salt tolerance […]

library_books

The regulon of the RNA chaperone CspA and its auto regulation in Staphylococcus aureus

2018
Nucleic Acids Res
PMCID: 5815144
PMID: 29309682
DOI: 10.1093/nar/gkx1284

[…] NA sample was used as a template for cDNA synthesis, following the recommendations of Affymetrix protocol and hybridized on Affymetrix custom S. aureus tiling microarrays, as previously described (). CspA-binding signals were normalized with Tiling Array Software (TAS) to generate signal intensity files that we then loaded into the Integrated Genome Browser (IGB) using the S. aureus NCTC 8325 geno […]

library_books

Molecular and virulence characterization of highly prevalent Streptococcus agalactiae circulated in bovine dairy herds

2017
PMCID: 5644065
PMID: 29037262
DOI: 10.1186/s13567-017-0461-2

[…] the host immune response [, ].To obtain more insight about the virulence factors of S. agalactiae strains, an array of virulence genes were screened (FigureĀ ). The result that dltA, fbsA, fbsB, bibA, cspA, gapC and hylB were found in all strains, suggesting they were conserved in S. agalactiae strains. The remaining seven virulence factors lmb, scpB, cylE, PI-1, PI-2a, PI-2b and lactose operon wer […]

library_books

Predicted Cold Shock Proteins from the Extremophilic Bacterium Deinococcus maricopensis and Related Deinococcus Species

2017
PMCID: 5624153
PMID: 29098004
DOI: 10.1155/2017/5231424

[…] nation of Pfam and ScanProsite was used to identify conserved protein domains within the sequence of Dm-Csp1, under default settings [, ]. To determine the number and type of Csps in D. maricopensis, CspA, B, C, D, E, F, G, H, and I protein sequences from E. coli K12 were used via BLASTp to query the genome of D. maricopensis LB-34. Unless stated otherwise, BLASTp was run according to default para […]

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CSPA institution(s)
Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland

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